View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_24 (Length: 248)
Name: NF20968_low_24
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 3 - 232
Target Start/End: Original strand, 25996423 - 25996652
Alignment:
| Q |
3 |
ataaaaagataaaaatgcattagcacactaatattgcttcaaaagaataaataaatttatatagctgcaagtgtcacaagacataccgaatatatatgtc |
102 |
Q |
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| T |
25996423 |
ataaaaagataaaaatgcattagcacactaatattgcttcaaaagaataaataaatttatatagctgcaagtgtcacaagacataccgaatatatatgtc |
25996522 |
T |
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| Q |
103 |
ctgttattatcttaaacaacaagaacccattaatgcatggatccataaataaacaaatatatcacaacacacacataagaaaaatatgtgttctccaacc |
202 |
Q |
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| T |
25996523 |
ctattattatcttaaacaacaagaacccattaatgcatggatccataaataaacaaatatatcacaacacacacataagaaaaatatgtgttctccaacc |
25996622 |
T |
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| Q |
203 |
ttaacaaacaagaccaaataccataattct |
232 |
Q |
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| T |
25996623 |
ttaacaaacaagaccaaataccataattct |
25996652 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 24361108 - 24361161
Alignment:
| Q |
106 |
ttattatcttaaacaacaagaacccattaatgcatggatccataaataaacaaata |
161 |
Q |
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| T |
24361108 |
ttattatcttaaa--acaagaaccaatttaagcatggatccataaataaacaaata |
24361161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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