View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_25 (Length: 244)
Name: NF20968_low_25
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_25 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 1091879 - 1091653
Alignment:
| Q |
18 |
gattatatagagatacacgtacaatcatattgatgagtggtgtttataaacttcttatatgcatgtatgtcaactgacccattaattttaacgttgcagt |
117 |
Q |
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| T |
1091879 |
gattatatagagatacacgtacaatcatattgatgagtggtgtttataaacttcttatatgcatgtatgtcaactgacccattaattttaacgttgcagt |
1091780 |
T |
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| Q |
118 |
gacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagagg |
217 |
Q |
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| T |
1091779 |
gacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagagg |
1091680 |
T |
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| Q |
218 |
aaactggaggtatcaagaataaataat |
244 |
Q |
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| T |
1091679 |
aaactggaggtatcaagaataaataat |
1091653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 36524475 - 36524249
Alignment:
| Q |
18 |
gattatatagagatacacgtacaatcatattgatgagtggtgtttataaacttcttatatgcatgtatgtcaactgacccattaattttaacgttgcagt |
117 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
36524475 |
gattatatacagatacacatacaatcatattgatgagtggtgtttataaacttcttatatgcatgcatgtcaactgacccattaattttaacattgcagt |
36524376 |
T |
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| Q |
118 |
gacttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagagg |
217 |
Q |
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| T |
36524375 |
gtcttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcggatggttatatggtagaaatatgttccacatcgggttcaattgcagagg |
36524276 |
T |
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| Q |
218 |
aaactggaggtatcaagaataaataat |
244 |
Q |
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| T |
36524275 |
aaactggaggtatcaagaataaataat |
36524249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 18100532 - 18100310
Alignment:
| Q |
23 |
tatagagatacacgtacaatcatattgatgagtggtgtttataaacttcttatatgcatgtatgtcaactgacccattaattttaacgttgcagtgactt |
122 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||| |
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| T |
18100532 |
tatacagatacacgtacaatcatattgagtagtggtgtttataaacttcttatatgcatgcatgtcaactgacccattaattttaacattgcagcgtctt |
18100433 |
T |
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| Q |
123 |
ttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaaact |
222 |
Q |
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| T |
18100432 |
ttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcggatgattatattgtagaaatatgttccacatcgggttcaactgcagaggaaact |
18100333 |
T |
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| Q |
223 |
gga-ggtatcaagaataaataat |
244 |
Q |
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||| ||||||||||||||||||| |
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| T |
18100332 |
ggagggtatcaagaataaataat |
18100310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 18096238 - 18096013
Alignment:
| Q |
20 |
ttatatagagatacacgtacaatcatattgatgagtggtgtttataaacttcttatatgcatgtatgtcaactgacccattaattttaacgttgcagtga |
119 |
Q |
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||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
18096238 |
ttatatacaaatacacgtacaatcatattgattagtggtgtttataaacttcttatatgcatgcatgtcaactgacccattaattttaacattgcagcct |
18096139 |
T |
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| Q |
120 |
cttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcagataattatattgtagaaatatgttccacatcgggttcaactgcagaggaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18096138 |
cttttctgcattttgctctcttaaatgtcgagaaaatcaaatgatagcggatgattatattgtagaaatatgttccacatcgggttcaactgcagaggaa |
18096039 |
T |
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| Q |
220 |
actgga-ggtatcaagaataaataat |
244 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
18096038 |
actggagggtatcaagaataaataat |
18096013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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