View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_26 (Length: 239)
Name: NF20968_low_26
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_26 |
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| [»] scaffold0643 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5441 - 5221
Alignment:
| Q |
19 |
gccgtctcaccaaaccaatcaaacgaaccacaaaatttgatatccaaaaacgtattatttcttgcataggtcgaagggtggggaaaaccagcactgtaac |
118 |
Q |
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| T |
5441 |
gccgtcttaccaaaccaatcaaacgaaccacaaaatttgatatccaaaaacgtattatttcttgcataggtcgaagggtgaggaaaaccagtactgtaac |
5342 |
T |
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| Q |
119 |
aatcaatttgtattcgttcaggnnnnnnnntttcaatggtaattgtatataaatttgctcccaaacaagtccaccaactccaagcacacgtgacttgacc |
218 |
Q |
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| T |
5341 |
aatcaatttgtattcgttcaggaaaaaaaaattcaatggtaattgtatataaatttgctcccaaacaagtccaccaactccaagcacacgtaacttgacc |
5242 |
T |
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| Q |
219 |
tgataatattaatatgaaaac |
239 |
Q |
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| T |
5241 |
aaataatattaatatgaaaac |
5221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 15818584 - 15818364
Alignment:
| Q |
19 |
gccgtctcaccaaaccaatcaaacgaaccacaaaatttgatatccaaaaacgtattatttcttgcataggtcgaagggtggggaaaaccagcactgtaac |
118 |
Q |
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|||||||||||| |||| ||| ||||||||||||||| | | || |||| ||||||||||| ||||||||||||| |||| | |||||| |||||||| |
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| T |
15818584 |
gccgtctcaccataccattcatacgaaccacaaaattcgtattgcacaaacatattatttctttcataggtcgaaggatgggtataaccagtactgtaac |
15818485 |
T |
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| Q |
119 |
aatcaatttgtattcgttcaggnnnnnnnntttcaatggtaattgtatataaatttgctcccaaacaagtccaccaactccaagcacacgtgacttgacc |
218 |
Q |
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| T |
15818484 |
aatcaatttgtattcgttcaggaaaaagtatttcaatggtaattgtataaatatttgctccaaaacaagtccaccaactcgaagcataagtgacttgacc |
15818385 |
T |
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| Q |
219 |
tgataatattaatatgaaaac |
239 |
Q |
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| T |
15818384 |
tgataatattaatattaaaac |
15818364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 15831531 - 15831495
Alignment:
| Q |
149 |
tttcaatggtaattgtatataaatttgctcccaaaca |
185 |
Q |
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| T |
15831531 |
tttcaatggtaattgtatataaagttgctcccaaaca |
15831495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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