View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_3 (Length: 516)
Name: NF20968_low_3
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 43677136 - 43676641
Alignment:
| Q |
18 |
agtttctctccgaaggttcgatcttttgtaaaagagagaaacccctttgaagaattcggaggtgggtctgaacagaatgagaagattgttgaaagatggg |
117 |
Q |
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| T |
43677136 |
agtttctctccgaaggttcgatcttttgtaaaagagagaaacccctttgaagaattcggaggtgggtctgaacagaatgagaagattgttgaaagatggg |
43677037 |
T |
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| Q |
118 |
ttattcaatatgaaagcaagaaaattaaggattgttctagttccaacactgcaaacactacaagaaggtcaagtaatacttttttgcagaatttgtataa |
217 |
Q |
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| T |
43677036 |
ttattcaatatgaaagcaagaaaattaaggattgttctagttccaacactgcaaacactacaagaaggtcaagtaatacttttttgcagaatttgtataa |
43676937 |
T |
|
| Q |
218 |
gaaatctactttgcttttaaggtctttgtatgctactgttaggcttttacctgcttttaagatttttaaggaacttagttcatctgcaaatgtttctgct |
317 |
Q |
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| T |
43676936 |
gaaatctactttgcttttaaggtctttgtatgctactgttaggcttttacctgcttttaagatttttaaggaacttagttcatctgcaaatgtttctgct |
43676837 |
T |
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| Q |
318 |
tttagtcttgctcatcgtgtttcgactttctttgaaccatttactactaaacaagaagctgaaatgcttaagtttgtgttcactcctgtggatactaatt |
417 |
Q |
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| T |
43676836 |
tttagtcttgctcatcgtgtttcgactttctttgaaccatttactactaaacaagaagctgaaatgcttaagtttgtgttcactcctgtggatactaatt |
43676737 |
T |
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| Q |
418 |
ctggtaagctgtgtttatcggtgatgtatcgaccatgtgtttctgatgtgagttcagaaccaacgactcctttgtctccacaagttataactgatt |
513 |
Q |
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| T |
43676736 |
ccggtaagctgtgtttatcggtgatgtatcgaccatgtgtttctgatgtgagttcggaaccaacgactcctttgtctccacaagttataactgatt |
43676641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 38885959 - 38886026
Alignment:
| Q |
201 |
ttgcagaatttgtataagaaatctactttgcttttaaggtctttgtatgctactgttaggcttttacc |
268 |
Q |
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| T |
38885959 |
ttgcaaaacttgtataagaaatcaactttacttttgaggtctttgtatgccactgttcgacttttacc |
38886026 |
T |
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