View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_5 (Length: 463)
Name: NF20968_low_5
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 2943308 - 2943725
Alignment:
| Q |
18 |
tggcaaggaaaataacaaatgcacgtccagatacttatatttaattaaggtcactacacaatattaattagaatacgtttcaagtttggttatgttgtgt |
117 |
Q |
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| T |
2943308 |
tggcaaggaaaataacaaatgcatgtccagatacttatatttaattaaggtcactacacaatattaattagaatatttttcaagtttggttatgttgtgt |
2943407 |
T |
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| Q |
118 |
tgcagtttgattgctccaaagagatcacgttgatggaggtactatgctgaaccatttggtcaacttcagcatattgnnnnnnnaccattccagttgtata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2943408 |
tgcagtttgattgctccaaagagatcacgttgatggaggtactatgctgaaccatttggtcaacttcagcatattgtttttttaccattccagttgtata |
2943507 |
T |
|
| Q |
218 |
gtttcattgatcttcaagtttaggtatttaatttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgaggttacaacccgatcattc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2943508 |
gtttcattgatcttcaagtttaggtatttaatttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattc |
2943607 |
T |
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| Q |
318 |
aaaatttacccaagcaccgaccaagcttccaaatattcctgtgcaggtaaagttgaagcttaatatattcttatttctgacgtgtatacagaaaatgttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
2943608 |
aaaatttacccaagcaccgaccaagcttccaaatattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttg |
2943707 |
T |
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| Q |
418 |
atgtttatattatgagta |
435 |
Q |
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| T |
2943708 |
atgtttatattatgagta |
2943725 |
T |
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