View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_6 (Length: 462)
Name: NF20968_low_6
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 22 - 443
Target Start/End: Complemental strand, 28962951 - 28962530
Alignment:
| Q |
22 |
gttcgaacacattctagcttttgacaaaattacagacatatatcgtaattatgtcaaattcaccgtcaatccaatagtgtatattatatacaaaattatg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962951 |
gttcgaacacattctagcttttgacaaaattacagacatatatcgtaattatgtcaaattcaccgtcaatccaatagtgtatattatatacaaaattatg |
28962852 |
T |
|
| Q |
122 |
aatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaattttcttttactgctaaattttgaactgtgaccatcatcatca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28962851 |
aatatgttcaaacgatgttcctccaagtgattaataaatatcctagcagagaatcaattttcttttactgctaaattttgaattgtgaccatcatcatca |
28962752 |
T |
|
| Q |
222 |
aacccttttatttaatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattc |
321 |
Q |
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| T |
28962751 |
aacccttttatttaatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattc |
28962652 |
T |
|
| Q |
322 |
aattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||| | |
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| T |
28962651 |
aattcttcaggactcattgatttttctctcttcaatgaagctctatcattgaatgtttcagactttttcaactccctttgagcccaagcaacaggatcat |
28962552 |
T |
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| Q |
422 |
catcaccaccacaaaaaccgcc |
443 |
Q |
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| T |
28962551 |
catcaccaccacaaaaaccgcc |
28962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 235 - 440
Target Start/End: Complemental strand, 29002467 - 29002262
Alignment:
| Q |
235 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
334 |
Q |
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||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
|
| Q |
335 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
434 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |
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| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
|
| Q |
435 |
aaaacc |
440 |
Q |
| |
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|||||| |
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| T |
29002267 |
aaaacc |
29002262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29002619 - 29002550
Alignment:
| Q |
109 |
atacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaatttt |
182 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||| || || |||||||||| ||||||||||| |
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| T |
29002619 |
atacaaacttatgaatatgttcaaatcatgtacctccaagtggtt----aaaatccttgcagtgaatcaatttt |
29002550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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