View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_7 (Length: 451)
Name: NF20968_low_7
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_7 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 376
Target Start/End: Complemental strand, 44887064 - 44886694
Alignment:
| Q |
4 |
tttatctatttgaatgacatccacaatataacnnnnnnnntataatataaattcttatttttaatgacacgacaacaattattattatacgaaaaattat |
103 |
Q |
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| T |
44887064 |
tttatctatttgaatgacatctacaatataacaaaaaaaatataatataaattcttatgtttaatgacacgacaacaattattattatacgaaaaattat |
44886965 |
T |
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| Q |
104 |
atttaagtgtatattcagggtaatgaaaaagttagtccaaagtcttctannnnnnngatgagatagaatccgttagtactagatatcaaaccttatattg |
203 |
Q |
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| T |
44886964 |
--ttaagtgtatattcagggtaatgaaaaatttagtccaaaatcttctattttcttgatgagatagaatccgttgatactagatatcaaattttatattg |
44886867 |
T |
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| Q |
204 |
ataccaaatcgtagcccttaaaattcgattaatcaatggttcacaaattatgcggtttgtttccttttgattctcatgctannnnnnnctcttattttca |
303 |
Q |
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| T |
44886866 |
atatcaaatcgtagcc-ttaaaattcgattaattaaaggttcacaaattatgcggtttgtttccttttgattctcatgctatttttttctcttattttca |
44886768 |
T |
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| Q |
304 |
tttgtgtgtgatgaatacattaa-ttatggtatcattcataccttctcccacgtcatttcccaaattatccata |
376 |
Q |
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| T |
44886767 |
tttgtgtgtgatgaatacattaatttatggtatcattcataccttctcccacgtcatttcccaaattatccata |
44886694 |
T |
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Back To:
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Target: scaffold0830 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 818 - 784
Alignment:
| Q |
1 |
atgtttatctatttgaatgacatccacaatataac |
35 |
Q |
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| T |
818 |
atgtttatctatttgaatgacatcaacaatataac |
784 |
T |
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