View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20968_low_8 (Length: 438)

Name: NF20968_low_8
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20968_low_8
NF20968_low_8
[»] chr7 (10 HSPs)
chr7 (216-421)||(16844801-16845006)
chr7 (5-190)||(16845005-16845190)
chr7 (248-421)||(16838736-16838922)
chr7 (232-399)||(18328346-18328510)
chr7 (208-336)||(18323987-18324114)
chr7 (228-383)||(22040779-22040931)
chr7 (122-200)||(18323834-18323916)
chr7 (350-394)||(22037979-22038023)
chr7 (347-421)||(18324150-18324224)
chr7 (353-398)||(22011860-22011905)
[»] chr5 (1 HSPs)
chr5 (208-399)||(3233444-3233639)
[»] chr3 (2 HSPs)
chr3 (66-154)||(3867025-3867112)
chr3 (29-67)||(3866797-3866835)
[»] chr2 (1 HSPs)
chr2 (208-289)||(10204411-10204494)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 216 - 421
Target Start/End: Complemental strand, 16845006 - 16844801
Alignment:
Q  216 acttcttactttatttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16845006 acttcttactttatttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttgaaagacatca 16844907  T
Q  316 aggttattgatagtacatggcaggacggaccaggaatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcact 415  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16844906 aggttattgatagtacatggcaggacggacgaggaatgatgggaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcaat 16844807  T
Q  416 catttt 421  Q
    ||||||    
T  16844806 catttt 16844801  T

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Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 16845190 - 16845005
Alignment:
Q  5 gtttaaagtcgaaacgttatgaagtggatctgcagactggtgtggaagataggttcagctggatatacacgaacaatgttgcgttttttgcagagaaaga 104  Q
    ||||||||||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16845190 gtttaaagtcgaaactttatggcgcggatctgcagactggtgtggaagataggttcagctggatatacacggacaatgttgcgttttttgcagagaaaga 16845091  T
Q  105 atcatttgattttataaatttatatgctttttcttgataatgatgctgctatagaatctaatttgtatatgcattcactgtgtcac 190  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16845090 atcatttgattatataaatttatatgctttttcttgataatgatgctgctatagaatctaatttgtatatgcattcactgtgtcac 16845005  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 248 - 421
Target Start/End: Complemental strand, 16838922 - 16838736
Alignment:
Q  248 ttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatcaaggttattgatagtacatggcaggacg----- 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||  |||||         
T  16838922 ttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagatatcaaggttattgatcgtacatggttggacgaggaa 16838823  T
Q  343 ----gaccaggaatgatag----gaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcactcatttt 421  Q
         |  | ||| || ||    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16838822 atgatagaaagaaagaaagggatgaagaaagaaacgaagaaagaggcttattgcagctaaaattgttttggttatagcactcatttt 16838736  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 18328346 - 18328510
Alignment:
Q  232 agttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatcaaggttattgatagtac 331  Q
    ||||||||||| | | ||||||||||||||||||||||||| ||||| |||| |||| ||||||||  ||||||||||| ||||| ||||||||  |||     
T  18328346 agttgtgttttacaacttcactttccaatctaacacaagtcctttttgaattgtagaactgcaatcctaacttcaaagatatcaacgttattgacggtaa 18328445  T
Q  332 atggcaggacggaccagg-aatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattg 399  Q
    ||||| ||| |    ||| ||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  18328446 atggctggatg----aggaaatgacaggaagaaagaaacgaagaaagaggcttattgtagttacaattg 18328510  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 18323987 - 18324114
Alignment:
Q  208 attatgcaacttcttactttatttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaa 307  Q
    |||| |||||||||| ||| ||| ||||||||||| | | ||||||||||||||||||||||||| ||||| |||| |||| || |||||  ||||||||    
T  18323987 attaagcaacttcttgctt-attcagttgtgttttgcaacttcactttccaatctaacacaagtcttttttgaattgtagaacttcaatcctaacttcaa 18324085  T
Q  308 agacatcaaggttattgatagtacatggc 336  Q
    ||| |||||  |||||||  |||||||||    
T  18324086 agatatcaacattattgacggtacatggc 18324114  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 383
Target Start/End: Original strand, 22040779 - 22040931
Alignment:
Q  228 atttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatcaaggttattgata 327  Q
    ||||| ||||||||| |||||||||| ||||||||||||  || | ||||| | || |||||||||||||  ||||| ||||| |||||  ||||||||     
T  22040779 atttatttgtgttttactatttcactctccaatctaacaagagccctttttgagttgtagatctgcaatcctaactttaaagatatcaacattattgatg 22040878  T
Q  328 gtacatggcaggacggaccagg-aatgataggaagaaagaaacgaagaaagaggctt 383  Q
    |||||| || | | |    ||| ||||||||||||||||||| ||||||||||||||    
T  22040879 gtacatagctgaatg----aggaaatgataggaagaaagaaaagaagaaagaggctt 22040931  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 18323834 - 18323916
Alignment:
Q  122 atttatatgctttttcttgataatgatgctg---ctatagaatctaatttgt-atatgcattcactgtgtcacatgtagtaca 200  Q
    |||||||| ||| ||||||||||||||||||   |||||||||||| ||| | |||| |||||| |||||||||||| |||||    
T  18323834 atttatattcttgttcttgataatgatgctgctactatagaatctagtttttcatatacattcattgtgtcacatgtggtaca 18323916  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 22037979 - 22038023
Alignment:
Q  350 aatgataggaagaaagaaacgaagaaagaggcttattgcagctac 394  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||    
T  22037979 aatgatacgaagaaagaaaagaagaaagaggcttattgtagctac 22038023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 18324150 - 18324224
Alignment:
Q  347 aggaatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattgttttagttatagcactcatttt 421  Q
    |||||| |||||||||||||||||||||||  ||||| ||| ||||| ||||  || |||||||| ||| |||||    
T  18324150 aggaatcataggaagaaagaaacgaagaaatgggctttttgtagctaaaattccttcagttatagtactaatttt 18324224  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 22011860 - 22011905
Alignment:
Q  353 gataggaagaaagaaacgaagaaagaggcttattgcagctacaatt 398  Q
    |||||||||||||||| | |||||| ||||||||| ||||||||||    
T  22011860 gataggaagaaagaaaagtagaaagcggcttattgtagctacaatt 22011905  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 399
Target Start/End: Complemental strand, 3233639 - 3233444
Alignment:
Q  208 attatgcaacttcttacttt--atttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttc 305  Q
    ||||||||||||||| ||||  |||||||||||||||  ||||||||| | | |||||||||||||| ||||| || |  |||||||||||| |||||||    
T  3233639 attatgcaacttcttgcttttgatttagttgtgttttgatatttcactcttccatctaacacaagtcctttttgaactgcagatctgcaatcccaacttc 3233540  T
Q  306 aaagacatcaaggttattgatagtacatggc-aggacggaccagg-aatgataggaagaaagaaacgaagaaagaggcttattgcagctacaattg 399  Q
    ||||||||||  ||||||||  |||  ||||  ||  |||  ||| ||| ||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  3233539 aaagacatcagtgttattgacggtaggtggcttggctggatgaggaaattatatgaagaaagaaaagaagaaagaggcttattgtagccacaattg 3233444  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 3867025 - 3867112
Alignment:
Q  66 gatatacacgaacaatgttgcg---ttttttgcagagaaagaatcatttgattttataaatttatatgctttttcttgataatgatgctgct 154  Q
    |||||||||||| |||||||||   |||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  3867025 gatatacacgaataatgttgcgattttttttgcagagaaagaatcatttgattttac----ttatatgctttttcttgataatgatgctgct 3867112  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 3866797 - 3866835
Alignment:
Q  29 tggatctgcagactggtgtggaagataggttcagctgga 67  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  3866797 tggatctgcagaccggtgtggaagataggttcggctgga 3866835  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 10204494 - 10204411
Alignment:
Q  208 attatgcaacttcttacttt--atttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagat 289  Q
    ||||||||||||||| ||||  ||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||    
T  10204494 attatgcaacttcttgcttttgatttatttgtgttttactatttcactctccaatctaacacaagtcatttttgaattgtagat 10204411  T

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