View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20969_high_11 (Length: 328)

Name: NF20969_high_11
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20969_high_11
NF20969_high_11
[»] chr1 (6 HSPs)
chr1 (11-180)||(49802449-49802618)
chr1 (181-310)||(49802763-49802891)
chr1 (50-144)||(43599446-43599540)
chr1 (190-310)||(16963954-16964074)
chr1 (230-307)||(27814416-27814493)
chr1 (221-310)||(46110402-46110491)
[»] chr7 (10 HSPs)
chr7 (11-180)||(22538399-22538568)
chr7 (181-310)||(22538715-22538844)
chr7 (181-310)||(41079702-41079831)
chr7 (188-307)||(43459578-43459697)
chr7 (189-310)||(11501300-11501421)
chr7 (35-106)||(11501753-11501824)
chr7 (253-310)||(6173390-6173447)
chr7 (230-310)||(47454457-47454537)
chr7 (187-310)||(32256269-32256391)
chr7 (189-307)||(22337246-22337364)
[»] chr3 (13 HSPs)
chr3 (11-180)||(26887106-26887275)
chr3 (181-310)||(26887422-26887551)
chr3 (189-298)||(27838051-27838160)
chr3 (189-298)||(35372034-35372143)
chr3 (189-310)||(41263758-41263879)
chr3 (190-310)||(40244306-40244426)
chr3 (189-276)||(42592693-42592780)
chr3 (188-307)||(38241029-38241147)
chr3 (221-310)||(10731005-10731094)
chr3 (189-310)||(34818206-34818327)
chr3 (11-52)||(53913962-53914003)
chr3 (189-307)||(3209841-3209959)
chr3 (189-310)||(40745341-40745462)
[»] chr6 (4 HSPs)
chr6 (11-153)||(18345894-18346036)
chr6 (188-276)||(29380345-29380433)
chr6 (189-307)||(23397229-23397347)
chr6 (195-276)||(17839020-17839101)
[»] chr8 (6 HSPs)
chr8 (181-310)||(42099973-42100102)
chr8 (190-310)||(45279800-45279920)
chr8 (188-307)||(32797264-32797383)
chr8 (190-310)||(13116450-13116570)
chr8 (221-307)||(30786801-30786887)
chr8 (226-310)||(41629828-41629912)
[»] chr2 (4 HSPs)
chr2 (189-310)||(1083108-1083229)
chr2 (190-310)||(6028837-6028957)
chr2 (243-310)||(17460613-17460680)
chr2 (190-307)||(32470451-32470568)
[»] chr4 (9 HSPs)
chr4 (189-310)||(23203828-23203949)
chr4 (189-304)||(2311080-2311194)
chr4 (189-310)||(40792869-40792990)
chr4 (243-307)||(1829877-1829941)
chr4 (190-310)||(7708664-7708784)
chr4 (190-310)||(52963689-52963809)
chr4 (188-310)||(52241030-52241151)
chr4 (243-310)||(393566-393633)
chr4 (240-307)||(1587306-1587373)
[»] scaffold0034 (1 HSPs)
scaffold0034 (189-310)||(109620-109741)
[»] chr5 (4 HSPs)
chr5 (221-310)||(325092-325181)
chr5 (189-310)||(39605343-39605465)
chr5 (190-310)||(30912038-30912158)
chr5 (253-307)||(324163-324217)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 49802449 - 49802618
Alignment:
Q  11 atcatcataatgttcttggtgtgactgttgaatctggaaaaagagaagaaaaacaagcaaagatttgaggaacccatcaaatcaattgattaaaaattca 110  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  49802449 atcatcataatgttcttggtgttactgttgaatctgaaaaaagagaagaaaaagaagcaaagatttgaggaacccatcaaatcaattgattaaaaaatca 49802548  T
Q  111 cgaaagattagatttttggttgaaaatcatccaagggaaaatgggaatttctgttgaatctgttgaatgt 180  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  49802549 cgaaagattagatttttggttgaaaatcatccaaggggaaatgagaatttctgttgaatctgttgaatgt 49802618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 49802763 - 49802891
Alignment:
Q  181 attcatatgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaattt 280  Q
    ||||| || |||||||||||| |||| |||||  ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||  ||    
T  49802763 attcacatatgaaaatctaacagtcccttttat-ataagtagatcgaatagttgaaataaacaaaattaatgaggtctacgatagaccacttttaaggtt 49802861  T
Q  281 ggtacacgatagacatttagagttaaagtt 310  Q
    ||||||| |||||||||||||||| |||||    
T  49802862 ggtacaccatagacatttagagttgaagtt 49802891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 43599446 - 43599540
Alignment:
Q  50 aaagagaagaaaaacaagcaaagatttgaggaacccatcaaatcaattgattaaaaattcacgaaagattagatttttggttgaaaatcatccaa 144  Q
    |||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||  |||||||||||||||||| |||||||||||||||||    
T  43599446 aaagagaagaaaaagaagcaaagattcgaggaacccatcaaagcaattgaataaaaaagcacgaaagattagattttgggttgaaaatcatccaa 43599540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 16964074 - 16963954
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| |||||| ||||| |||||  |||| ||||||||| |||| |||| |||||||||||  ||||||| ||| ||||||||||||  ||||| ||  |    
T  16964074 tgaagatctaatggtcccttttatgataaatagatcgaagggttaaaattaacaaaattaataaggtctatgatggaccacttttaaggttggtccatca 16963975  T
Q  290 tagacatttagagttaaagtt 310  Q
    || ||||||||||||||||||    
T  16963974 taaacatttagagttaaagtt 16963954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 27814493 - 27814416
Alignment:
Q  230 ggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaa 307  Q
    |||| |||| |||||||||||  |||| |||||| ||||||||||||| ||||| ||| |||||||||||||||||||    
T  27814493 ggttaaaattaacaaaattaataaggtttacgatggaccacttttaaagttggtccaccatagacatttagagttaaa 27814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 46110491 - 46110402
Alignment:
Q  221 agatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    ||||| || |||| |||| |||||||||||  ||||||||||| ||||||| ||||  ||||| ||| ||||| ||||||||||||||||    
T  46110491 agatcaaacggttaaaattaacaaaattaataaggtctacgatggaccactcttaaggttggtccaccatagatatttagagttaaagtt 46110402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 22538399 - 22538568
Alignment:
Q  11 atcatcataatgttcttggtgtgactgttgaatctggaaaaagagaagaaaaacaagcaaagatttgaggaacccatcaaatcaattgattaaaaattca 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |    
T  22538399 atcatcataatgttcttggtgttactgttgaatctggaaaaagagaagaaaaataagcaaagatttgaggaacccatcaaagcaattgattaaaaaatta 22538498  T
Q  111 cgaaagattagatttttggttgaaaatcatccaagggaaaatgggaatttctgttgaatctgttgaatgt 180  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||    
T  22538499 cgaaagattagatttttggttgaaaatcattcaaggggaaatgggaatttctattgaatctgttgaatgt 22538568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 22538715 - 22538844
Alignment:
Q  181 attcatatgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaattt 280  Q
    ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||  ||    
T  22538715 attcacatgtgaaaatctaacggtcccttttatcataattagatcgaatgattgaaataaacaaaattaatgaggtctacgatagaccgcttttaatgtt 22538814  T
Q  281 ggtacacgatagacatttagagttaaagtt 310  Q
    ||||||| ||||| |||| |||||||||||    
T  22538815 ggtacaccatagatatttggagttaaagtt 22538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 41079702 - 41079831
Alignment:
Q  181 attcatatgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaattt 280  Q
    ||||| |||||||||||||||| | | |||||  |||| ||||| |||||||| |||| |||||||||||  ||||||||||| ||||||||||||  ||    
T  41079702 attcacatgtgaaaatctaacgattccttttatgataaatagattgaatggttaaaatcaacaaaattaataaggtctacgatggaccacttttaatgtt 41079801  T
Q  281 ggtacacgatagacatttagagttaaagtt 310  Q
    | | ||| ||||| |||| |||||||||||    
T  41079802 gttccaccatagatatttggagttaaagtt 41079831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 43459697 - 43459578
Alignment:
Q  188 tgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacac 287  Q
    |||||| |||||||||||  |||||  |||| |||||||||||||| |||| |||||||||||  |||||||||||  |||| ||||||  ||| | |||    
T  43459697 tgtgaagatctaacggtctcttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacgatgtaccatttttaaggttgatccac 43459598  T
Q  288 gatagacatttagagttaaa 307  Q
     |||||||||| ||||||||    
T  43459597 catagacatttggagttaaa 43459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 11501421 - 11501300
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||| ||||  |||||  |||| |||||||||||||| |||| |||||||||||  |||||||| ||  |||||||||||  ||||| |||     
T  11501421 gtgaagatctaatggtctcttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacaatgaaccacttttaaggttggtccacc 11501322  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||||||||||  ||||||||||    
T  11501321 atagacatttgaagttaaagtt 11501300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 11501824 - 11501753
Alignment:
Q  35 ctgttgaatctggaaaaagagaagaaaaacaagcaaagatttgaggaacccatcaaatcaattgattaaaaa 106  Q
    ||||||||||| ||| ||||||||||||| ||||||  ||| ||| ||||||||||| ||||||||||||||    
T  11501824 ctgttgaatctagaataagagaagaaaaagaagcaataattcgagaaacccatcaaagcaattgattaaaaa 11501753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 6173390 - 6173447
Alignment:
Q  253 aggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||| ||||||||||||||||    
T  6173390 aggtctacgatggaccacttttaaagttggtccactatagatatttagagttaaagtt 6173447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 47454537 - 47454457
Alignment:
Q  230 ggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    |||| |||| || ||||||||  ||||||||||| ||||||| ||||  |||||  || ||||||||||||||||||||||    
T  47454537 ggttaaaattaataaaattaataaggtctacgatggaccactcttaaggttggtctaccatagacatttagagttaaagtt 47454457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 310
Target Start/End: Original strand, 32256269 - 32256391
Alignment:
Q  187 atgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtaca 286  Q
    ||||||| |||||||||||| |||||  |||| | ||||||| |||| |||| ||||||| ||   |||| ||| || ||||||||||||  ||||| ||    
T  32256269 atgtgaagatctaacggtcccttttatgataaatggatcgaacggttaaaattaacaaaa-tattaaggtttacaatggaccacttttaatgttggtcca 32256367  T
Q  287 cgatagacatttagagttaaagtt 310  Q
    | ||||||||||  ||||||||||    
T  32256368 ccatagacatttgaagttaaagtt 32256391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 22337246 - 22337364
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||||||||| |||||  |||| |||||||||  ||| |||| |||||||||||  ||||||||| |  || || |||||  ||||| |||     
T  22337246 gtgaagatctaacggtcccttttatgataaatagatcgaaatgttaaaattaacaaaattaataaggtctacggtgtactacatttaaggttggtccacc 22337345  T
Q  289 atagacatttagagttaaa 307  Q
    ||||||||||  |||||||    
T  22337346 atagacatttgaagttaaa 22337364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 26887106 - 26887275
Alignment:
Q  11 atcatcataatgttcttggtgtgactgttgaatctggaaaaagagaagaaaaacaagcaaagatttgaggaacccatcaaatcaattgattaaaaattca 110  Q
    |||||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||    
T  26887106 atcatcataatgttcttgatgttactgttgaatttgaaaaaagagaagaaaaataagcaaagatttgaggaacccatcaaagcaattgattaaaaaatca 26887205  T
Q  111 cgaaagattagatttttggttgaaaatcatccaagggaaaatgggaatttctgttgaatctgttgaatgt 180  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  26887206 cgaaagattagatttttggttgaaaatcatcaaaggggaaatgagaatttctgttgaatctgttgaatgt 26887275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 26887422 - 26887551
Alignment:
Q  181 attcatatgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaattt 280  Q
    ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||    
T  26887422 attcacatgtgaaagtctaacggtcccttttatcataattagatcgaatggttgaaataaataaaattaatgaggtctacgatagaccacttttaaggtt 26887521  T
Q  281 ggtacacgatagacatttagagttaaagtt 310  Q
    ||||||| ||||| ||||  ||||||||||    
T  26887522 ggtacaccatagatatttgaagttaaagtt 26887551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 27838160 - 27838051
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| ||||||||||||||||||  |||| |||||||||| ||| |||| |||||||||||  ||||||||||| ||||||||||||| |||||  ||     
T  27838160 gtgaagatctaacggtccattttatgataaatagatcgaatagttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtctacc 27838061  T
Q  289 atagacattt 298  Q
    ||||||||||    
T  27838060 atagacattt 27838051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 35372034 - 35372143
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| ||||||| ||||||||||  |||| |||||||||||||| |||| |||||||||||  ||||||||||| ||||||||||||| ||||| ||      
T  35372034 gtgaagatctaacagtccattttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtccaac 35372133  T
Q  289 atagacattt 298  Q
    ||||||||||    
T  35372134 atagacattt 35372143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 41263879 - 41263758
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||| |||||||||||  |||| |||||||||||||| |||| |||||||||||  |||||||  |||||||||||||||  ||| | |||     
T  41263879 gtgaagatctaatggtccattttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctagaatagaccacttttaaggttgatccacc 41263780  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||||| ||||||||||||||||    
T  41263779 atagatatttagagttaaagtt 41263758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 40244426 - 40244306
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| ||||||||||||||||||  |||| |||||| ||  ||| |||| |||||||||||  ||||||||||| |||||||||||| |||||| ||| |    
T  40244426 tgaagatctaacggtccattttatgataaatagatcaaagagttaaaattaacaaaattaataaggtctacgatggaccacttttaagtttggtccacca 40244327  T
Q  290 tagacatttagagttaaagtt 310  Q
    |||||| ||  ||||||||||    
T  40244326 tagacacttgaagttaaagtt 40244306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 42592780 - 42592693
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaa 276  Q
    ||||| |||||| |||||||||||  |||| |||||||||||||| |||| |||||||||||  |||||||  |||||||||||||||    
T  42592780 gtgaagatctaatggtccattttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctagaatagaccacttttaa 42592693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 38241147 - 38241029
Alignment:
Q  188 tgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacac 287  Q
    |||||| ||||||| |||  |||||  |||| |||||||||||||| |||| |||||||||||  || |||||||| ||||| |||| || ||||| |||    
T  38241147 tgtgaagatctaaccgtctcttttatgataaatagatcgaatggttaaaattaacaaaattaataagctctacgatggacca-tttttaagttggttcac 38241049  T
Q  288 gatagacatttagagttaaa 307  Q
     |||||||||| ||||||||    
T  38241048 catagacatttggagttaaa 38241029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 310
Target Start/End: Complemental strand, 10731094 - 10731005
Alignment:
Q  221 agatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    |||||||||| || |||| |||||||||||  |||| || ||||||||||||||||  ||||| ||| ||||||||||  ||||||||||    
T  10731094 agatcgaatgattaaaattaacaaaattaataaggtatatgatagaccacttttaaggttggttcaccatagacatttgaagttaaagtt 10731005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 34818327 - 34818206
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||| ||||| |||||  |||| ||||||||| |||| |||| |||||||||||  ||||||| |||||| || ||||||  ||| |  ||     
T  34818327 gtgaagatctaatggtcccttttatgataaatagatcgaacggttaaaattaacaaaattaataaggtctatgatagatcatttttaaggttgatcaacc 34818228  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||||||||||| ||||||||||    
T  34818227 atagacatttaaagttaaagtt 34818206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 53913962 - 53914003
Alignment:
Q  11 atcatcataatgttcttggtgtgactgttgaatctggaaaaa 52  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  53913962 atcatcataatgttcttggtgttactgttgaatctggaaaaa 53914003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 3209841 - 3209959
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||||||| |||||||  |||| |||||| ||||||| |||| |||||||||||  |||| |||||| ||| | ||||||  ||||| |||     
T  3209841 gtgaagatctaacggttcattttatgataaatagatcaaatggttaaaattaacaaaattaataaggtttacgatggactatttttaaggttggtccacc 3209940  T
Q  289 atagacatttagagttaaa 307  Q
    ||| ||||||  |||||||    
T  3209941 atatacatttgaagttaaa 3209959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 40745341 - 40745462
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||||||||| |||||  |||| |||||||| |  || |||| |||||||||||  |||||||||||  |||||||||||  ||| ||||      
T  40745341 gtgaagatctaacggtcccttttataataaatagatcgagtaattaaaattaacaaaattaataaggtctacgatgaaccacttttaaggttgatacatc 40745440  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||| |||||| || ||||||||    
T  40745441 ataaacatttggaattaaagtt 40745462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 18346036 - 18345894
Alignment:
Q  11 atcatcataatgttcttggtgtgactgttgaatctggaaaaagagaagaaaaacaagcaaagatttgaggaacccatcaaatcaattgattaaaaattca 110  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  18346036 atcatcataatgttcttggtgttactgttgaatctgaaaaaagagaagaaaaagaagcaaagatttgaggaacccatcaaatcaattgattaaaaaatca 18345937  T
Q  111 cgaaagattagatttttggttgaaaatcatccaagggaaaatg 153  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  18345936 cgaaagattagatttttggttgaaaatcatccaaggggaaatg 18345894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 29380433 - 29380345
Alignment:
Q  188 tgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaa 276  Q
    |||||| |||||||||||| |||||  |||| |||||||||||||| |||| |||||||||||  ||||||||||| ||| ||||||||    
T  29380433 tgtgaagatctaacggtcccttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggactacttttaa 29380345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 23397229 - 23397347
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| ||||||||||||||||||  |||| ||||||| |||||| |||| |||||||||||  |||| |||| | ||| ||||||||  ||||| |||     
T  23397229 gtgaagatctaacggtccattttatgataaatagatcggatggttaaaattaacaaaattaataaggtatacggtggactacttttaaggttggtccacc 23397328  T
Q  289 atagacatttagagttaaa 307  Q
    ||||||||||  |||||||    
T  23397329 atagacatttgaagttaaa 23397347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 17839020 - 17839101
Alignment:
Q  195 atctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaa 276  Q
    |||||||||||| |||||  |||| |||||||||||||| |||| |||||||||||  |||||||| || ||| ||||||||    
T  17839020 atctaacggtcccttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacaatggactacttttaa 17839101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 42099973 - 42100102
Alignment:
Q  181 attcatatgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaattt 280  Q
    ||||| |||||||||||||||||| | |||||  |||| |||||||||||||| |||| |||||||||||  ||||||||||| ||||||||||||  ||    
T  42099973 attcacatgtgaaaatctaacggttccttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaggtt 42100072  T
Q  281 ggtacacgatagacatttagagttaaagtt 310  Q
    ||| ||| | ||||||||  ||||||||||    
T  42100073 ggtccaccaaagacatttgaagttaaagtt 42100102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 45279920 - 45279800
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| |||||||| ||| ||||| ||||| |||||||||||||| |||| ||||||||||   ||||||||||||||||||||||||   |||| ||| |    
T  45279920 tgaagatctaacgatcccttttatcataaatagatcgaatggttaaaattaacaaaattattaaggtctacgatagaccacttttaagactggtccacca 45279821  T
Q  290 tagacatttagagttaaagtt 310  Q
    || ||||||||||||||||||    
T  45279820 tatacatttagagttaaagtt 45279800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 32797383 - 32797264
Alignment:
Q  188 tgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacac 287  Q
    |||||| |||||||||||  |||||  |||| |||||||||||||| |||| |||||||||||  |||||||||||  |||| ||||||  ||| | ||     
T  32797383 tgtgaagatctaacggtctcttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacgatgaaccatttttaaggttgatccat 32797284  T
Q  288 gatagacatttagagttaaa 307  Q
     |||||||||| ||||||||    
T  32797283 catagacatttggagttaaa 32797264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 13116570 - 13116450
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| |||||||||||| |||||  |||| |||||||||||||| |||| ||||||| |||   |||||||||| ||||||| | ||  |||||  |  |    
T  13116570 tgaagatctaacggtcccttttatgataaatagatcgaatggttaaaattaacaaaagtaatagggtctacgatggaccactctgaagattggtctatta 13116471  T
Q  290 tagacatttagagttaaagtt 310  Q
    ||||||||| |||||||||||    
T  13116470 tagacatttggagttaaagtt 13116450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 30786887 - 30786801
Alignment:
Q  221 agatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaa 307  Q
    ||||| || |||| |||| |||||||||||  |||| || ||| ||||||||||||| ||| | ||| |||||||||||||||||||    
T  30786887 agatcaaacggttaaaattaacaaaattaataaggtttatgatggaccacttttaaagttgatccaccatagacatttagagttaaa 30786801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 41629912 - 41629828
Alignment:
Q  226 gaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    |||||||| |||| |||||||||||  |||| ||||||  |||||||||||  ||||| ||| |||||| ||| ||||| |||||    
T  41629912 gaatggttaaaattaacaaaattaataaggtatacgatgaaccacttttaaggttggttcaccatagacttttggagttcaagtt 41629828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 1083229 - 1083108
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||| |||||||||||  |||| |||||||||||||| |||| |||||||||||  |||||||| |||||||||||||||  ||| | |||     
T  1083229 gtgaagatctaatggtccattttataataaatagatcgaatggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatccacc 1083130  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||||| ||||||||||||||||    
T  1083129 atagatatttagagttaaagtt 1083108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 6028957 - 6028837
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| |||||||||||| ||||| ||||| |||||||||||||| |||| ||||||||||   ||||||||||| ||||||||||||   |||| ||| |    
T  6028957 tgaagatctaacggtcccttttatcataaatagatcgaatggttaaaattaacaaaattattaaggtctacgatggaccacttttaagactggtccacca 6028858  T
Q  290 tagacatttagagttaaagtt 310  Q
    || ||||||||||||||||||    
T  6028857 tatacatttagagttaaagtt 6028837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 17460613 - 17460680
Alignment:
Q  243 aaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    ||||||||  ||||||||||||||||||||||||  ||||| ||| ||||||||||| ||||||||||    
T  17460613 aaaattaataaggtctacgatagaccacttttaagattggtccaccatagacatttaaagttaaagtt 17460680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 32470451 - 32470568
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| ||||||||||   |||||  |||| |||||||||||||| |||| |||||||||||  ||||||||||| ||||| ||||||  ||  | ||| |    
T  32470451 tgaagatctaacggtttcttttatgataaatagatcgaatggttaaaattaacaaaattaataaggtctacgatggaccatttttaaggtttatccacca 32470550  T
Q  290 tagacatttagagttaaa 307  Q
    ||||||||| ||||||||    
T  32470551 tagacatttggagttaaa 32470568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 23203828 - 23203949
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||| |||||||||||  |||| || ||||||||||| |||| |||||||||||  |||||||| |||||||||||||||  ||| | |||     
T  23203828 gtgaagatctaatggtccattttatgataaatatatcgaatggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatccacc 23203927  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||||| ||||||||||||||||    
T  23203928 atagatatttagagttaaagtt 23203949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 2311194 - 2311080
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||||||||| |||||  |||| |||||||||||||| |||| ||||| |||||  ||||||||||||||||||||||||  ||||| |||     
T  2311194 gtgaagatctaacggtcc-ttttatgataaatagatcgaatggttaaaattaacaatattaataaggtctacgatagaccacttttaagattggtccacc 2311096  T
Q  289 atagacatttagagtt 304  Q
    ||||||||||| ||||    
T  2311095 atagacatttaaagtt 2311080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 40792990 - 40792869
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||||||||| |||||  |||| ||||||||| || | |||| || ||||||||  |||||||| |||||||||||||||  ||||| |||     
T  40792990 gtgaagatctaacggtcccttttatgataaatagatcgaacggataaaattaagaaaattaataaggtctaccatagaccacttttaaggttggtccact 40792891  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||||||||||| ||||||||||    
T  40792890 atagacatttaaagttaaagtt 40792869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 1829941 - 1829877
Alignment:
Q  243 aaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaa 307  Q
    ||||||||  ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  1829941 aaaattaataaggtctacgatggaccacttttaaagttggtccacgatagacatttagagttaaa 1829877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 310
Target Start/End: Original strand, 7708664 - 7708784
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| |||||| |||||||||||  |||| ||||||| ||||||  ||| |||||||||||  ||||||| |||  |||||||||||  ||||| ||| |    
T  7708664 tgaagatctaatggtccattttaagataaatagatcggatggttagaattaacaaaattaataaggtctatgatgtaccacttttaaggttggtccacca 7708763  T
Q  290 tagacatttagagttaaagtt 310  Q
    |||| ||||||||||||||||    
T  7708764 tagatatttagagttaaagtt 7708784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 52963809 - 52963689
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||||||||||| |||| ||||| ||||| |||||| || |||| |||  |||||| |||   ||||||| ||| ||||||||||||   |||| ||| |    
T  52963809 tgaaaatctaaccgtcccttttatcataaatagatctaaaggttaaaactaacaaatttatgaaggtctatgatggaccacttttaaggctggtccacca 52963710  T
Q  290 tagacatttagagttaaagtt 310  Q
    ||||||||| |||||||||||    
T  52963709 tagacatttggagttaaagtt 52963689  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 310
Target Start/End: Original strand, 52241030 - 52241151
Alignment:
Q  188 tgtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacac 287  Q
    |||||||||||||| |||| |||||  |||| |||||||||||| | |||| ||||||| |||  |||||||  || ||||||||||||   |||| |||    
T  52241030 tgtgaaaatctaactgtcccttttatgataaatagatcgaatggataaaattaacaaaactaataaggtctatcatggaccacttttaaggatggt-cac 52241128  T
Q  288 gatagacatttagagttaaagtt 310  Q
     ||||| |||| |||||||||||    
T  52241129 catagatatttggagttaaagtt 52241151  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 393566 - 393633
Alignment:
Q  243 aaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    ||||||||  ||||||||||| ||||||||||||  ||||| ||| ||| ||||||||| ||||||||    
T  393566 aaaattaataaggtctacgatggaccacttttaaggttggtccactataaacatttagaattaaagtt 393633  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 1587373 - 1587306
Alignment:
Q  240 aacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaa 307  Q
    |||||||||||  |||| |||||| || |||||||||| |||||  || |||||||||||||||||||    
T  1587373 aacaaaattaataaggtatacgatggaacacttttaaagttggtctactatagacatttagagttaaa 1587306  T

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Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 109620 - 109741
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacg 288  Q
    ||||| |||||||||| |||||||  |||| |||||| ||||||| |||| |||||||||||  ||||||||||| ||| | ||||||  ||||| |||     
T  109620 gtgaagatctaacggttcattttatgataaatagatcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccacc 109719  T
Q  289 atagacatttagagttaaagtt 310  Q
    ||| ||||||  ||||||||||    
T  109720 atatacatttgaagttaaagtt 109741  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 325092 - 325181
Alignment:
Q  221 agatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaagtt 310  Q
    ||||| || |||| |||| |||||||||||  ||||||||||| ||||||| ||||  ||||| ||| ||||||||||||||||||||||    
T  325092 agatcaaacggttaaaattaacaaaattaataaggtctacgatggaccactattaaggttggtccaccatagacatttagagttaaagtt 325181  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 39605343 - 39605465
Alignment:
Q  189 gtgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccac-ttttaaatttggtacac 287  Q
    ||||| |||||||||||| |||||  |||| ||||||||| || | |||| || ||||||||  |||||||| ||||||||| ||||||  ||||| |||    
T  39605343 gtgaagatctaacggtcccttttatgataaatagatcgaacggataaaattaagaaaattaataaggtctaccatagaccactttttaagattggtccac 39605442  T
Q  288 gatagacatttagagttaaagtt 310  Q
     ||| ||||||| |||| |||||    
T  39605443 catatacatttaaagttgaagtt 39605465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 310
Target Start/End: Original strand, 30912038 - 30912158
Alignment:
Q  190 tgaaaatctaacggtccattttaccataagtagatcgaatggttgaaataaacaaaattaacgaggtctacgatagaccacttttaaatttggtacacga 289  Q
    |||| |||||| ||||| |||||  |||| ||||||| ||| ||  ||| |||||||||||  ||||||| |||  |||||||||||  ||||| ||| |    
T  30912038 tgaagatctaatggtcccttttaagataaatagatcggatgattagaattaacaaaattaataaggtctatgatgtaccacttttaaggttggtccacca 30912137  T
Q  290 tagacatttagagttaaagtt 310  Q
    |||| |||| |||||||||||    
T  30912138 tagatatttggagttaaagtt 30912158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 324217 - 324163
Alignment:
Q  253 aggtctacgatagaccacttttaaatttggtacacgatagacatttagagttaaa 307  Q
    ||||||| ||| ||||||| ||||| ||||| ||| |||||||||||||||||||    
T  324217 aggtctatgatggaccactattaaagttggtccaccatagacatttagagttaaa 324163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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