View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20969_high_16 (Length: 263)

Name: NF20969_high_16
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20969_high_16
NF20969_high_16
[»] chr2 (19 HSPs)
chr2 (11-247)||(15070425-15070661)
chr2 (11-65)||(21423365-21423419)
chr2 (13-65)||(5958966-5959018)
chr2 (13-65)||(37140171-37140223)
chr2 (11-65)||(24475967-24476021)
chr2 (11-65)||(37060114-37060168)
chr2 (16-69)||(30393632-30393685)
chr2 (12-65)||(37802872-37802925)
chr2 (11-63)||(30609721-30609773)
chr2 (11-65)||(6974552-6974606)
chr2 (11-65)||(13274201-13274255)
chr2 (11-64)||(27004450-27004503)
chr2 (11-59)||(4382213-4382261)
chr2 (22-64)||(10217401-10217443)
chr2 (11-65)||(28107523-28107577)
chr2 (11-56)||(27404650-27404695)
chr2 (21-64)||(22194328-22194371)
chr2 (24-64)||(5807368-5807407)
chr2 (11-59)||(43022916-43022964)
[»] scaffold0306 (1 HSPs)
scaffold0306 (11-65)||(13091-13145)
[»] scaffold0152 (1 HSPs)
scaffold0152 (11-65)||(22182-22236)
[»] chr8 (18 HSPs)
chr8 (11-65)||(22798541-22798595)
chr8 (11-66)||(3001412-3001467)
chr8 (11-62)||(23403601-23403652)
chr8 (11-62)||(30204683-30204734)
chr8 (11-65)||(4623885-4623939)
chr8 (11-65)||(16655978-16656032)
chr8 (13-65)||(4234178-4234230)
chr8 (24-66)||(4414225-4414267)
chr8 (16-62)||(23275567-23275613)
chr8 (11-64)||(14842309-14842362)
chr8 (14-67)||(21567705-21567758)
chr8 (11-62)||(39436844-39436895)
chr8 (22-64)||(45310061-45310103)
chr8 (11-62)||(36470170-36470222)
chr8 (13-65)||(37630002-37630054)
chr8 (16-58)||(29958554-29958596)
chr8 (11-62)||(36046564-36046614)
chr8 (27-64)||(41787497-41787534)
[»] chr5 (17 HSPs)
chr5 (11-65)||(3729368-3729422)
chr5 (11-64)||(39508351-39508404)
chr5 (11-67)||(8159105-8159161)
chr5 (11-65)||(34766919-34766973)
chr5 (13-62)||(21020686-21020735)
chr5 (12-61)||(21583853-21583902)
chr5 (11-66)||(2068962-2069015)
chr5 (11-65)||(25081767-25081821)
chr5 (11-65)||(25139736-25139790)
chr5 (24-65)||(9793780-9793821)
chr5 (24-63)||(9793683-9793722)
chr5 (22-65)||(41929341-41929384)
chr5 (22-64)||(9913803-9913845)
chr5 (27-64)||(3711183-3711220)
chr5 (11-58)||(20815677-20815724)
chr5 (21-64)||(20736203-20736246)
chr5 (37-65)||(38451089-38451117)
[»] chr3 (12 HSPs)
chr3 (11-65)||(35534482-35534536)
chr3 (11-67)||(45602982-45603038)
chr3 (11-62)||(36404257-36404308)
chr3 (11-64)||(39391958-39392011)
chr3 (13-65)||(37115924-37115976)
chr3 (11-65)||(46487270-46487323)
chr3 (27-65)||(14201717-14201755)
chr3 (11-65)||(29360482-29360536)
chr3 (24-65)||(52742352-52742393)
chr3 (11-53)||(16353524-16353566)
chr3 (14-67)||(48944143-48944196)
chr3 (11-51)||(3618375-3618415)
[»] chr1 (14 HSPs)
chr1 (11-65)||(41998914-41998968)
chr1 (11-64)||(794914-794967)
chr1 (16-65)||(39001947-39001996)
chr1 (14-65)||(1585860-1585911)
chr1 (11-62)||(18808781-18808832)
chr1 (11-65)||(26653975-26654029)
chr1 (24-65)||(6750358-6750399)
chr1 (21-65)||(3695406-3695450)
chr1 (12-62)||(571650-571700)
chr1 (11-65)||(4792603-4792657)
chr1 (15-57)||(11121865-11121907)
chr1 (15-64)||(9224863-9224912)
chr1 (22-64)||(44272403-44272446)
chr1 (11-65)||(24909543-24909597)
[»] chr4 (12 HSPs)
chr4 (14-63)||(12701040-12701089)
chr4 (11-63)||(21555382-21555434)
chr4 (12-64)||(53584602-53584654)
chr4 (13-64)||(56100175-56100226)
chr4 (11-65)||(35929707-35929761)
chr4 (12-67)||(19598365-19598420)
chr4 (11-65)||(36609448-36609503)
chr4 (12-65)||(35749385-35749438)
chr4 (11-64)||(41842789-41842842)
chr4 (11-54)||(827840-827883)
chr4 (14-65)||(44243734-44243785)
chr4 (11-65)||(23249470-23249524)
[»] scaffold0532 (1 HSPs)
scaffold0532 (12-64)||(11320-11372)
[»] chr6 (8 HSPs)
chr6 (11-62)||(2814925-2814976)
chr6 (11-64)||(444522-444575)
chr6 (11-64)||(1067801-1067854)
chr6 (12-62)||(24640388-24640438)
chr6 (13-62)||(26394026-26394075)
chr6 (11-65)||(6200197-6200251)
chr6 (23-65)||(12324172-12324214)
chr6 (12-68)||(23774066-23774122)
[»] chr7 (6 HSPs)
chr7 (11-67)||(8163678-8163734)
chr7 (11-67)||(40337101-40337157)
chr7 (11-64)||(41326042-41326095)
chr7 (11-67)||(2362417-2362473)
chr7 (16-63)||(35589447-35589494)
chr7 (27-64)||(31637707-31637744)
[»] scaffold1248 (1 HSPs)
scaffold1248 (13-63)||(970-1020)
[»] scaffold0952 (1 HSPs)
scaffold0952 (13-63)||(1293-1343)
[»] scaffold0302 (1 HSPs)
scaffold0302 (11-65)||(18538-18592)
[»] scaffold0025 (1 HSPs)
scaffold0025 (14-65)||(67872-67923)
[»] scaffold0140 (1 HSPs)
scaffold0140 (11-65)||(21476-21530)
[»] scaffold0121 (1 HSPs)
scaffold0121 (13-62)||(37440-37489)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 15070425 - 15070661
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagacccaaagggattctgatccattttcaaccattcaaagcatccct 110  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||||||||    
T  15070425 gtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaattagtcccaaaaggattctgatccattttcaaccattcaaagcatccct 15070524  T
Q  111 atcaacggattgtgagttggatggatctcgggttatgtgattgggtatattcgagttcatggttaaattagcattttgagaccaaaattgcaagaaagtg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15070525 atcaacggattgtgagttggatggatctcgggttatgtgattggatatattcgagttcatggttaaattagcattttgagaccaaaattgcaagaaagtg 15070624  T
Q  211 aaaactgtaataagtaaagaagaaaaaggcaacttca 247  Q
    ||||| |||||||||||||||||||||||||||||||    
T  15070625 aaaaccgtaataagtaaagaagaaaaaggcaacttca 15070661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 21423419 - 21423365
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21423419 gtgagatgaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 21423365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 5959018 - 5958966
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5959018 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 5958966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 37140171 - 37140223
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37140171 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 37140223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 24475967 - 24476021
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24475967 gtgataagaagatttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 24476021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 37060114 - 37060168
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  37060114 gtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 37060168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 30393632 - 30393685
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagaccc 69  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30393632 aagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaaaccc 30393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 37802872 - 37802925
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  37802872 tgagaagaagacttgtatatttcaaaaatttaaaacaaaaactatttcaaacag 37802925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 30609721 - 30609773
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  30609721 gtgagaagaagacttgtatatttcaataactgaaaacaaaaacgatttcaaac 30609773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 6974552 - 6974606
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  6974552 gtgagaagagcacttatatatttcaaaaactgaaaacaaaaactatttcaaacag 6974606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 13274255 - 13274201
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||    
T  13274255 gtgagaagaggacttgtatatttcaaaaattaaaaacaaaaactatttcaaacag 13274201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 27004503 - 27004450
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||    
T  27004503 gtgagaagaggacttatatatttcaaaaattgaaaacaaaaactatttcaaaca 27004450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 4382261 - 4382213
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttc 59  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  4382261 gtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttc 4382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 10217401 - 10217443
Alignment:
Q  22 acttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  10217401 acttgtatatttcaaaaactgaaaataaaaactatttcaaaca 10217443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 28107523 - 28107577
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  28107523 gtgagaagaggatttgtatatttcaaaaactgaaaacaaaaattgtttcaaacag 28107577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 27404650 - 27404695
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactat 56  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  27404650 gtgagaagaggacttgtatatttcaaaaactaaaaacaaaaactat 27404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 22194328 - 22194371
Alignment:
Q  21 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  22194328 gacttgtatatttcaaaaaccaaaaacaaaaactatttcaaaca 22194371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 5807368 - 5807407
Alignment:
Q  24 ttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  5807368 ttgtatatttcaaaaactg-aaacaaaaactatttcaaaca 5807407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 43022916 - 43022964
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttc 59  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| ||||||    
T  43022916 gtgagaagaggacttgtatattttaaaaactaaaaacaaaaattatttc 43022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 13091 - 13145
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13091 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 13145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 22236 - 22182
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22236 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 22182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 22798595 - 22798541
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22798595 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 22798541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 3001412 - 3001467
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaga 66  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  3001412 gtgagaagaggacttgtatatttcaaaaactgaaaataaaaactatttcaaacaga 3001467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 23403652 - 23403601
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23403652 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 23403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 30204683 - 30204734
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30204683 gtgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 30204734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 4623885 - 4623939
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  4623885 gtgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacag 4623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 16656032 - 16655978
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  16656032 gtgagaagaaggcttgtatattttaaaaactgaaaacaaaaactatttcaaacag 16655978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 4234230 - 4234178
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  4234230 gagaagatgacttgtatatttcaaaaactgaaaacaaaaactattttaaacag 4234178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 4414267 - 4414225
Alignment:
Q  24 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaga 66  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4414267 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacaga 4414225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 23275567 - 23275613
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  23275567 aagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 23275613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 14842362 - 14842309
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  14842362 gtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaattatttcaaaca 14842309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 21567758 - 21567705
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    |||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  21567758 agaagaggatttgtatatttctaaaactgaaaacaaaaactatttcaaacagac 21567705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 39436895 - 39436844
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  39436895 gtgagaagaggacttgtatatttcaaaaattgaaaacaaaaattatttcaaa 39436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 45310061 - 45310103
Alignment:
Q  22 acttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  45310061 acttgtatatttcaaaaattgaaaacaaaaactatttcaaaca 45310103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 36470170 - 36470222
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactg-aaaacaaaaactatttcaaa 62  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  36470170 gtgagaagatgacttgtatatttcaaaaactgaaaaacaaaaattatttcaaa 36470222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 37630054 - 37630002
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||| | ||| ||||||| |||||||||||||||||||||||||||||||    
T  37630054 gagaagagggcttatatatttaaaaaactgaaaacaaaaactatttcaaacag 37630002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 29958554 - 29958596
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaaaactattt 58  Q
    |||| |||||||||||||||||||||||||||||||| |||||    
T  29958554 aagatgacttgtatatttcaaaaactgaaaacaaaaattattt 29958596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 36046564 - 36046614
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  36046564 gtgaaaaggagatttgtatatttcaaaaactg-aaacaaaaactatttcaaa 36046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 41787534 - 41787497
Alignment:
Q  27 tatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41787534 tatattttaaaaactgaaaacaaaaactattttaaaca 41787497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 3729368 - 3729422
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3729368 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 3729422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 39508351 - 39508404
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39508351 gtgagaaaaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 39508404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 8159105 - 8159161
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  8159105 gtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacagac 8159161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 34766919 - 34766973
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  34766919 gtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacag 34766973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 21020735 - 21020686
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21020735 gagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaa 21020686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 21583902 - 21583853
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaa 61  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21583902 tgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 2069015 - 2068962
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaga 66  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  2069015 gtgagaagaagactt--atatttcaaaaactgaaaacaaaaactatttcaaacaga 2068962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 25081821 - 25081767
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  25081821 gtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacag 25081767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 25139790 - 25139736
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  25139790 gtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaacag 25139736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9793780 - 9793821
Alignment:
Q  24 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9793780 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 9793821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 9793683 - 9793722
Alignment:
Q  24 ttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9793683 ttgtatatttcaaaaactgaaaacaaaaactatttcaaac 9793722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 41929384 - 41929341
Alignment:
Q  22 acttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  41929384 acttgcatatttcaaaaactgaaaacaaaaactatttcaaacag 41929341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 9913845 - 9913803
Alignment:
Q  22 acttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  9913845 acttgtatatttcaaaaactaaaaacaaaaactatttcaaaca 9913803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 3711220 - 3711183
Alignment:
Q  27 tatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3711220 tatatttcaaaaactgaaaacaaaaactatttcaaaca 3711183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 20815724 - 20815677
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactattt 58  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  20815724 gtgagaaaaggacttgtatattttaaaaactgaaaacaaaaactattt 20815677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 20736203 - 20736246
Alignment:
Q  21 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||    
T  20736203 gacttatatttttcaaaaattgaaaacaaaaactatttcaaaca 20736246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Original strand, 38451089 - 38451117
Alignment:
Q  37 aaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||||||||||||||||||||||    
T  38451089 aaactgaaaacaaaaactatttcaaacag 38451117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 35534536 - 35534482
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35534536 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactattttaaacag 35534482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 45603038 - 45602982
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45603038 gtgataagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 45602982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 36404257 - 36404308
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36404257 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 36404308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 39392011 - 39391958
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39392011 gtgaaaagaaaacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 39391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 37115924 - 37115976
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  37115924 gagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaacag 37115976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 46487323 - 46487270
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  46487323 gtgagaagaagacttatatatttcaaaaactgaaaa-aaaaactatttcaaacag 46487270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 14201755 - 14201717
Alignment:
Q  27 tatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14201755 tatatttcaaaaactgaaaacaaaaactatttcaaacag 14201717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 29360536 - 29360482
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||    
T  29360536 gtgagaagaggacttgtatatttcaaaaactgaaaagaaaaattgtttcaaacag 29360482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 52742393 - 52742352
Alignment:
Q  24 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  52742393 ttgtatatttcaaaaactggaaacaaaaactatttcaaacag 52742352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 16353524 - 16353566
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaac 53  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  16353524 gtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaac 16353566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 48944143 - 48944196
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    |||||| |||||||||||||||||| || |||| ||||||||||||||| ||||    
T  48944143 agaagaggacttgtatatttcaaaagctaaaaagaaaaactatttcaaagagac 48944196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 3618375 - 3618415
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaa 51  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  3618375 gtgagaagaaaacttgtatatttcagaaactgaaaacaaaa 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 41998914 - 41998968
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41998914 gtgagaagaagacttgtatatttcaaaaaatgaaaacaaaaactatttcaaacag 41998968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 794967 - 794914
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  794967 gtgagaagaagacctgtatatttcaaaaactgaaaacaaaaaatatttcaaaca 794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 39001996 - 39001947
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39001996 aagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 39001947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 1585911 - 1585860
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  1585911 agaagaagacttgtatatttcaaaaactaaaaacataaactatttcaaacag 1585860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 18808832 - 18808781
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  18808832 gtgagaagaagacttgtatatttcataaactgaaaacaaaaattatttcaaa 18808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 26653975 - 26654029
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  26653975 gtgagaagaggacctgtatatttcaaaaattgaaaacaaaaactatttcaaacag 26654029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 6750358 - 6750399
Alignment:
Q  24 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6750358 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 6750399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 3695450 - 3695406
Alignment:
Q  21 gacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  3695450 gacttgtatatttcaaaaaccgaaaacaaaaactatttcaaacag 3695406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 571700 - 571650
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    |||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  571700 tgagaagaggacgtatatatttcaaaaactgaaaacaaaaactatttcaaa 571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 4792603 - 4792657
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||  |||||||||||||||||||| |||||||||||||||| ||||||    
T  4792603 gtgagaagagaacttgtatatttcaaaaactaaaaacaaaaactattttaaacag 4792657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 11121907 - 11121865
Alignment:
Q  15 gaagaagacttgtatatttcaaaaactgaaaacaaaaactatt 57  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  11121907 gaagatgacttgtatatttcaaaaactgaaaacaaaaactatt 11121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 9224863 - 9224912
Alignment:
Q  15 gaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  9224863 gaagaaaatttgtgtatttcaaaaactgaaaacaaaaactatttcaaaca 9224912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 44272403 - 44272446
Alignment:
Q  22 acttgtatatttcaaaa-actgaaaacaaaaactatttcaaaca 64  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  44272403 acttgtatatttcaaaaaactgaaaacaaaaactatttcaaaca 44272446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 24909543 - 24909597
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||  ||| |||||||| |||||||||||| ||||||||||||||||||    
T  24909543 gtgagaagagaactagtatattttaaaaactgaaaataaaaactatttcaaacag 24909597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12701089 - 12701040
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12701089 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 12701040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 21555434 - 21555382
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21555434 gtgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaac 21555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 53584602 - 53584654
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53584602 tgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 53584654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 56100175 - 56100226
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  56100175 gagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 56100226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 35929761 - 35929707
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  35929761 gtgagaagaggacttatatatttcaaaaactgaaaacaaaaactatttcaaacag 35929707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 19598420 - 19598365
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||    
T  19598420 tgagaaaatgacttgtatatttcgaaaactgaaaacaaaaactatttcaaacagac 19598365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 36609448 - 36609503
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactg-aaaacaaaaactatttcaaacag 65  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  36609448 gtgagaagaggatttgtatatttcaaaaactgaaaaacaaaaactatttcaaacag 36609503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 35749438 - 35749385
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||    
T  35749438 tgagaagatgacttgtatatttcaaaaattgaaaataaaaattatttcaaacag 35749385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41842842 - 41842789
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||| | || ||||||||||||||||| |||||||||||||||||||||||    
T  41842842 gtgagaaaaggatttgtatatttcaaaaaccgaaaacaaaaactatttcaaaca 41842789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 827883 - 827840
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaact 54  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  827883 gtgagaagaggacttgtatatttcaaaaaccgaaaacaaaaact 827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 44243734 - 44243785
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||| ||||||||||||||||||||| |||||||||  ||||||||||||    
T  44243734 agaagatgacttgtatatttcaaaaactaaaaacaaaatttatttcaaacag 44243785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 23249524 - 23249470
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| | |||||||||||||||||| ||||||||||| | ||||||||||    
T  23249524 gtgagaagagggcttgtatatttcaaaaaccgaaaacaaaaattgtttcaaacag 23249470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 11372 - 11320
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11372 tgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 11320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 2814925 - 2814976
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2814925 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 2814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 444575 - 444522
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  444575 gtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactattttaaaca 444522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 1067854 - 1067801
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1067854 gtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 1067801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 24640388 - 24640438
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  24640388 tgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 24640438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 26394026 - 26394075
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||    
T  26394026 gagaagaagatttttatatttcaaaaactgaaaacaaaaactatttcaaa 26394075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 6200197 - 6200251
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||||||  | ||||||||||||||||||||||||||||| ||||||||||||    
T  6200197 gtgagaagagaatttgtatatttcaaaaactgaaaacaaaaaatatttcaaacag 6200251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 12324214 - 12324172
Alignment:
Q  23 cttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  12324214 cttgtatatttcaaaaactgaaaacaaaaactacttcaaacag 12324172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 23774122 - 23774066
Alignment:
Q  12 tgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagacc 68  Q
    ||||||||  |||||||||||||||||| | |||| |||||||||||||||||||||    
T  23774122 tgagaagagaacttgtatatttcaaaaattaaaaataaaaactatttcaaacagacc 23774066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 8163678 - 8163734
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  8163678 gtgagaagagaacttgtatatttcaaaaacagaaaacaaaaactatttcaaacagac 8163734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 40337101 - 40337157
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  40337101 gtgagaagatgacttgcatatttcgaaaactgaaaacaaaaactatttcaaacagac 40337157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41326095 - 41326042
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  41326095 gtgagaagaagatttatatatttcaaaaactcaaaacaaaaactatttcaaaca 41326042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 2362417 - 2362473
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacagac 67  Q
    |||||||||||| |||||||||| |||||||||||||||||| | ||||||||||||    
T  2362417 gtgagaagaagatttgtatattttaaaaactgaaaacaaaaattgtttcaaacagac 2362473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 35589447 - 35589494
Alignment:
Q  16 aagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||    
T  35589447 aagaggacttgtatatttcaaaaatcgaaaacaaaaactatttcaaac 35589494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 31637744 - 31637707
Alignment:
Q  27 tatatttcaaaaactgaaaacaaaaactatttcaaaca 64  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  31637744 tatattttaaaaactgaaaacaaaagctatttcaaaca 31637707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 1020 - 970
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  1020 gagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaac 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 1293 - 1343
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 63  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  1293 gagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 18538 - 18592
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  18538 gtgagaagatgacttgtatatttcaaaaactaaaaccaaaaactatttcaaacag 18592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 67923 - 67872
Alignment:
Q  14 agaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  67923 agaagaggacttgtatattttaaaaactgaaaacaaaaattatttcaaacag 67872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 21530 - 21476
Alignment:
Q  11 gtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaacag 65  Q
    ||||||||| || || |||||||||||||||||||||||||||| ||||||||||    
T  21530 gtgagaagatgatttatatatttcaaaaactgaaaacaaaaactgtttcaaacag 21476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 37440 - 37489
Alignment:
Q  13 gagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 62  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  37440 gagaagaggacttgtatatttcaaaaaccgaaaacaaacactatttcaaa 37489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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