View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_high_3 (Length: 581)
Name: NF20969_high_3
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 31 - 544
Target Start/End: Original strand, 45596377 - 45596906
Alignment:
| Q |
31 |
tcaggcgaagttgtgggaaaactttttgaagcggtggattggagaga------------aaagacaagtcaatactatcggcaatgaatgtttattggtt |
118 |
Q |
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| T |
45596377 |
tcaggtgaagttgtgtgaaaactttttgaagcggtagattggagagagaagtgatgagaaaagacaagacaatactatcggcaatgaatgtttattggtt |
45596476 |
T |
|
| Q |
119 |
aaggtgtatagtgttgacgagtttcatttatcagctgaacttgaacgaactgtgtaacgtgtcaaaatatttctcaacgtgggcttctacaattcatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45596477 |
aaggtgtatagtgttgacgagtttcatttatcagctgaacttgaacgaactgtgtaacgtgtcaaaatatttctcaacgtgggcttctacaattcatttt |
45596576 |
T |
|
| Q |
219 |
cataatttctctttattttttgacaggagggtg--------tgtgacattaatctctcctgtagatggaaagataaaaaacaattcgatcatccattcta |
310 |
Q |
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| T |
45596577 |
cataatttctctttattttttgacaggagggtggggaaatgtgtgacattaatctcttgtgtagatggaaagataaaaaacaattcgatcatccattcta |
45596676 |
T |
|
| Q |
311 |
tgctgtcttccaatagtaagtagatagaagttcatatctagtagtactattttatcggattaatggtccaactgaactgctcactagtcaaatcgagttg |
410 |
Q |
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| T |
45596677 |
tgctgtcttccaatagta----gatagaagttcatatctagtagtactattttatcggattaatggtccaactgaactgctcactagtcaaatcgagttg |
45596772 |
T |
|
| Q |
411 |
agtttacataaagaagnnnnnnnttactataaactttttnnnnnnnttacgttaacaattcttccaaaaacacttattaaggattcaaaagagaaagatt |
510 |
Q |
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| T |
45596773 |
agtttacataaaaaagaaaaaaattactataaacttttttaaaaaattactttaacaattgttctaaaaacacttattaaggattcaaaagagaaagatt |
45596872 |
T |
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| Q |
511 |
ttataaaatttatataaaataagtttctttttaa |
544 |
Q |
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| T |
45596873 |
ttataaaatttatataaaataagtttctttttaa |
45596906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 28198005 - 28198074
Alignment:
| Q |
481 |
cacttattaaggattcaaaagag-aaagattttataaaatttatataaaataagtttctttttaaagttt |
549 |
Q |
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| T |
28198005 |
cacttgttaaggattcaaaagaggaaataatttataaaatttatgtagaaaaagtttctttttgaagttt |
28198074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 39575467 - 39575536
Alignment:
| Q |
481 |
cacttattaaggattcaaaaga-gaaagattttataaaatttatataaaataagtttctttttaaagttt |
549 |
Q |
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| T |
39575467 |
cacttattaaggattcaaaagaggaaataatttataaattttatgtataaaaagtttctttttgaagttt |
39575536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 45185523 - 45185470
Alignment:
| Q |
510 |
tttataaaatttatataaaataagtttctttttaaagttttaatacgttgaatat |
564 |
Q |
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| T |
45185523 |
tttataaattttatgtaaa-taattttctttttaaagttttaatatgttgaatat |
45185470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 545
Target Start/End: Original strand, 32931505 - 32931559
Alignment:
| Q |
492 |
gattcaaaagagaaagat-tttataaaatttatataaaataagtttctttttaaa |
545 |
Q |
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| T |
32931505 |
gattcaaaagagaaagttatttataaattttatataaaaaatgtttctttttaaa |
32931559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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