View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20969_low_10 (Length: 355)

Name: NF20969_low_10
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20969_low_10
NF20969_low_10
[»] chr7 (1 HSPs)
chr7 (17-248)||(40326950-40327178)
[»] chr4 (7 HSPs)
chr4 (225-288)||(21205840-21205903)
chr4 (217-288)||(27271326-27271397)
chr4 (301-340)||(21205888-21205927)
chr4 (225-268)||(33083696-33083739)
chr4 (308-340)||(27271389-27271421)
chr4 (223-263)||(30059292-30059332)
chr4 (171-199)||(53028035-53028063)
[»] chr8 (2 HSPs)
chr8 (224-271)||(5436735-5436782)
chr8 (226-267)||(14383323-14383364)
[»] chr5 (2 HSPs)
chr5 (221-260)||(9157823-9157862)
chr5 (171-199)||(32190518-32190546)
[»] chr1 (3 HSPs)
chr1 (175-210)||(7047094-7047129)
chr1 (222-267)||(28818767-28818812)
chr1 (225-269)||(30053571-30053615)
[»] scaffold0002 (1 HSPs)
scaffold0002 (217-262)||(130280-130325)
[»] chr3 (1 HSPs)
chr3 (217-262)||(13176663-13176708)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 40327178 - 40326950
Alignment:
Q  17 agtaacttatatccaactatcaagtgcatgtttggaatcatagtccttttttccataatcacaagtgtcgccctaattttgacaaaaactacatatgaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  40327178 agtaacttatatccaactatcaagtgcatgtttggaatcatagtccttttt-ccataatcacaagtgtcgccgtaattttgacaaaaactatatatgaag 40327080  T
Q  117 ctttaattatcgtgattccaaacatacacggaaacatttgtttcctagagttgcaagag--tttgaccttataacctcaagggaccgggttcaaattttg 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    | || |||  |||| ||||||||||||||||||||||||||||||||||    
T  40327079 ctttaattatcgtgattccaaacatacacggaaatatttgtttccta----tccatgaggttttgcccttataacctcaagggaccgggttcaaattttg 40326984  T
Q  215 tctgaaacagttgtaaaatggtcattagtaccac 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  40326983 tctgaaacagttgtaaaatggccattagtaccac 40326950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 21205840 - 21205903
Alignment:
Q  225 ttgtaaaatggtcattagtaccaccataattaataataattttttcctcaagttctatgtacta 288  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21205840 ttgtaaaatggtcattaataccaccataattaataataattttttcctcaagttctatgtacta 21205903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 27271326 - 27271397
Alignment:
Q  217 tgaaacagttgtaaaatggtcattagtaccaccataattaataataattttttcctcaagttctatgtacta 288  Q
    ||||||| |||||||||| |||||||| ||||| |||||||||||||||||| |||||| || |||||||||    
T  27271326 tgaaacaattgtaaaatgatcattagtgccaccgtaattaataataatttttccctcaatttttatgtacta 27271397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 21205888 - 21205927
Alignment:
Q  301 caagttctatgtactatgaaacttaattatttgcaaaaaa 340  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  21205888 caagttctatgtactatgaaacttaattattcgcaaaaaa 21205927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 33083696 - 33083739
Alignment:
Q  225 ttgtaaaatggtcattagtaccaccataattaataataattttt 268  Q
    |||||||||||||||||||  |||||| ||||||||||||||||    
T  33083696 ttgtaaaatggtcattagtgtcaccattattaataataattttt 33083739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 27271389 - 27271421
Alignment:
Q  308 tatgtactatgaaacttaattatttgcaaaaaa 340  Q
    |||||||||||||||||||||||| ||||||||    
T  27271389 tatgtactatgaaacttaattattcgcaaaaaa 27271421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 30059332 - 30059292
Alignment:
Q  223 agttgtaaaatggtcattagtaccaccataattaataataa 263  Q
    |||||||||||| ||||||||||||| || |||||||||||    
T  30059332 agttgtaaaatgatcattagtaccacaattattaataataa 30059292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 53028063 - 53028035
Alignment:
Q  171 aagagtttgaccttataacctcaagggac 199  Q
    |||||||||||||||||||||||||||||    
T  53028063 aagagtttgaccttataacctcaagggac 53028035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 5436735 - 5436782
Alignment:
Q  224 gttgtaaaatggtcattagtaccaccataattaataataattttttcc 271  Q
    ||||||||||||||||||||| |||  |||||||||||||||| ||||    
T  5436735 gttgtaaaatggtcattagtatcacattaattaataataatttcttcc 5436782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 14383364 - 14383323
Alignment:
Q  226 tgtaaaatggtcattagtaccaccataattaataataatttt 267  Q
    ||||||||||||||||| |||||| |||||||||| ||||||    
T  14383364 tgtaaaatggtcattagaaccaccttaattaataagaatttt 14383323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 9157862 - 9157823
Alignment:
Q  221 acagttgtaaaatggtcattagtaccaccataattaataa 260  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  9157862 acagttgtaaaatggtcattagtgccaccataatcaataa 9157823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 32190546 - 32190518
Alignment:
Q  171 aagagtttgaccttataacctcaagggac 199  Q
    |||||||||||||||||||||||||||||    
T  32190546 aagagtttgaccttataacctcaagggac 32190518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 7047129 - 7047094
Alignment:
Q  175 gtttgaccttataacctcaagggaccgggttcaaat 210  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7047129 gtttgaccttataacctcaagggaccgagttcaaat 7047094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 28818767 - 28818812
Alignment:
Q  222 cagttgtaaaatggtcattagtaccaccataattaataataatttt 267  Q
    |||||||||||||||||||||| ||||  || ||||||||||||||    
T  28818767 cagttgtaaaatggtcattagtgccacattagttaataataatttt 28818812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 30053571 - 30053615
Alignment:
Q  225 ttgtaaaatggtcattagtaccaccataattaataataatttttt 269  Q
    ||||||||| || |||||||||||  |||||||||||||||||||    
T  30053571 ttgtaaaattgttattagtaccactttaattaataataatttttt 30053615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 130325 - 130280
Alignment:
Q  217 tgaaacagttgtaaaatggtcattagtaccaccataattaataata 262  Q
    |||||||||||||||||| |||||||| |||| || ||||||||||    
T  130325 tgaaacagttgtaaaatgatcattagttccacaattattaataata 130280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 13176663 - 13176708
Alignment:
Q  217 tgaaacagttgtaaaatggtcattagtaccaccataattaataata 262  Q
    |||||||||||||||||| |||||||| |||| || ||||||||||    
T  13176663 tgaaacagttgtaaaatgatcattagttccacaattattaataata 13176708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University