View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20969_low_12 (Length: 325)
Name: NF20969_low_12
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 4253374 - 4253080
Alignment:
| Q |
13 |
aatatctttgaatttgagaatggattcaagtctagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaaataa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4253374 |
aatatctttgaatttgagaatggattcaagtttagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagataaataa |
4253275 |
T |
|
| Q |
113 |
ttagcagtactcacctgcttgnnnnnnngtgtagcagctttggttgaaatgtggtcaagaaggtcatcagctacatagacagcacctttgagatcatcga |
212 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4253274 |
ttagcagtactcacctgcttgtttttctgtgtagcagctttggttgaaatgttgtcaagaaggtcatcagctacatagacaacacctttgagatcatcga |
4253175 |
T |
|
| Q |
213 |
tctagctgttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacagcttccacagcataaagagtgttcttcaacctttggacc |
307 |
Q |
| |
|
|| | ||||||||||||| || ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4253174 |
tccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaagagtgttcttcaacctttggacc |
4253080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 4315123 - 4315418
Alignment:
| Q |
13 |
aatatctttgaatttgagaatggattcaagtctagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaaataa |
112 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||||||| ||||| |||||||| ||| |||| |||||||||||||||||||| |||||| || |
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|
| T |
4315123 |
aatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagctagagaagtag |
4315222 |
T |
|
| Q |
113 |
ttagcag---tactcacctgcttgnnnnnnngtgtagcagctttggttgaaatgtggtcaagaaggtcatcagctacatagacagcacctttgagatcat |
209 |
Q |
| |
|
||| ||| | |||||||||||| | |||||||||||||| ||||||||||| ||||| |||||||| | ||| |||||| |||||||||||| |
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|
| T |
4315223 |
ttaacagcggtgctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctttgagatcat |
4315322 |
T |
|
| Q |
210 |
cgatctagctgttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacagcttccacagcataaagagtgttcttcaacctttgga |
305 |
Q |
| |
|
| | | | |||||| ||||||||||||||||||||| ||||| | ||| || ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4315323 |
caagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacctttgga |
4315418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 4309149 - 4309432
Alignment:
| Q |
20 |
ttgaatttgagaatggattcaagtctagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaaataattagcag |
119 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||||||| | ||||| |||| ||| ||| |||||||||||||| |||||||| ||||||| || |||| || |
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|
| T |
4309149 |
ttgattttcagaatgtattcaagtctagcaactatgtcttccaacttataaaccatatccctttcttcaaaattgaaaaatggagagaagtagttagtag |
4309248 |
T |
|
| Q |
120 |
tactcacctgcttgnnnnnnngtgtagcagctttggttgaaatgtggtcaagaaggtcatcagctacatagacagcacctttgagatcatcgatctagct |
219 |
Q |
| |
|
||||||||| |||| | |||||||||||||| |||||||||| | |||||||||||| ||||||||||| ||||||||||||||| | | | |
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|
| T |
4309249 |
tactcacctccttgttcttccgagtagcagctttggtacaaatgtggtcgaaaaggtcatcagcaacatagacagcgtctttgagatcatcgagccattt |
4309348 |
T |
|
| Q |
220 |
gttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacagcttccacagcataaagagtgttcttcaacctttg |
303 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||| || ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
4309349 |
cttaatagcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaagagtgttattcaacctttg |
4309432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 4306258 - 4306554
Alignment:
| Q |
10 |
aaaaatatctttgaatttgagaatggattcaagtctagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| | ||| || ||||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4306258 |
aaaaatatctttgaatttgagaatgtattcaagtctagcaactatatctaccaactcacaaaccatatctctttcttcaaagttgaaaaagcgagagaag |
4306357 |
T |
|
| Q |
110 |
taattagcagtactcacctgcttgnnnnnnngtgta---gcagctttggttgaaatgtggtcaagaaggtcatcagctacatagacagcacctttgagat |
206 |
Q |
| |
|
|| ||| || |||||||| ||| | ||||||||||| || |||||||| ||||| ||||||| | ||| |||||| ||||||||| |
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|
| T |
4306358 |
tagttaacaacactcacctctttgttttccttcccaattgcagctttggtagagatgtggtcgagaagatcatcagtaaaataaacagcatctttgagat |
4306457 |
T |
|
| Q |
207 |
catcgatctagctgttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacagcttccacagcataaagagtgttcttcaacctttg |
303 |
Q |
| |
|
|||| | | | || ||| |||||||||||||| |||||| ||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4306458 |
catcaagccatttgataacagcagagtctttgagctgtttctgttcagcatcgttcaacacagcttcaacagcataaagagtgttcttcaacctttg |
4306554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 4246260 - 4246137
Alignment:
| Q |
13 |
aatatctttgaatttgagaatggattcaagtctagcaactatattt----tccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaa |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||| | |||| |||| ||| ||| ||||| |||||||||||||||||||||||||| |
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|
| T |
4246260 |
aatatctttgaatttgagaatgtattcaagcctagcaactatatatatcttccaacttaaaaaccatatccctatcttcaaagttgaaaaagcgagagaa |
4246161 |
T |
|
| Q |
109 |
ataattagcagtactcacctgctt |
132 |
Q |
| |
|
|| |||| | ||||||| ||||| |
|
|
| T |
4246160 |
gtagttagtactactcacatgctt |
4246137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 4246093 - 4245990
Alignment:
| Q |
170 |
agaaggtcatcagctacatagacagcacctttgagatcatcgatctagctgttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacag |
269 |
Q |
| |
|
|||||||| ||||||| |||| |||| ||||||| ||||| | |||| |||||| |||||||||||||| ||||| ||||| ||||| || || |||| |
|
|
| T |
4246093 |
agaaggtcgtcagctatatagggagcatctttgaggtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacag |
4245994 |
T |
|
| Q |
270 |
cttc |
273 |
Q |
| |
|
|||| |
|
|
| T |
4245993 |
cttc |
4245990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 41932806 - 41932502
Alignment:
| Q |
13 |
aatatctttgaatttgagaatggattcaagtctagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaaataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
41932806 |
aatatctttgaatttgagaatggattcaagtctagcggcgatattttccaacttacaaaacatatctctttcttcaaagttgaaaaagcgagagaagtag |
41932707 |
T |
|
| Q |
113 |
ttagcagtactcacctgct-----------tgnnnnnnngt-gtagcagctttggttgaaatgtggtcaagaaggtcatcagctacatagacagcacctt |
200 |
Q |
| |
|
||| |||||||||||||| | || | ||||||||| || || ||||| || | || ||||||||| |||||||||||| ||| |
|
|
| T |
41932706 |
ttaagagtactcacctgcttctccttgttcttccaagaagtagcagcagctttagtagagatgtgatccaaaatgtcatcagcaacatagacagcatctt |
41932607 |
T |
|
| Q |
201 |
tgagatcatcgatctagctgttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacagcttccacagcataaagagtgttcttcaacct |
300 |
Q |
| |
|
|||||||||||| | | |||||| ||||||||||||||||||||| ||||| ||||| || | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
41932606 |
tgagatcatcgagccatttgttaacagcagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgttcttcaacct |
41932507 |
T |
|
| Q |
301 |
ttgga |
305 |
Q |
| |
|
||||| |
|
|
| T |
41932506 |
ttgga |
41932502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 34803149 - 34803428
Alignment:
| Q |
13 |
aatatctttgaatttgagaatggattcaagtctagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagagaaataa |
112 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| | |||| ||||| | |||| ||| ||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
34803149 |
aatatctttgaattttagaatgtattcaagtctagaagctatgttttctaacttaaaaaccatatccctttcttcaaagttgaaaaggcgatagaa---- |
34803244 |
T |
|
| Q |
113 |
ttagcagtactcacctgcttgnnnnnnngtgtag---cagctttggttgaaatgtggtcaagaaggtcatcagctacatagacagcacctttgagatcat |
209 |
Q |
| |
|
|||||||||| ||| | |||| | ||||| || |||||||| || | |||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
34803245 |
------gtactcacctcctttttcttccgagtagttgcggctttagtagaaatgtgatccaaaaggtcatcagctacataaacagcgtctttgaggtcat |
34803338 |
T |
|
| Q |
210 |
cgatctagctgttaatagcagagtctttgaactgtttttgttccgcatcgtttagcacagcttccacagcataaagagtgttcttcaacc |
299 |
Q |
| |
|
||| | || |||||| |||||||||||||| |||||| | ||||||||| | || |||||||| || ||||| |||| |||||||||| |
|
|
| T |
34803339 |
cgagccagttgttaacagcagagtctttgatctgtttctattccgcatcataaagaacagcttctactgcatatggagtattcttcaacc |
34803428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 6060696 - 6060730
Alignment:
| Q |
175 |
gtcatcagctacatagacagcacctttgagatcat |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
6060696 |
gtcatcagctacatagacagcatctttgagatcat |
6060730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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