View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_13 (Length: 293)
Name: NF20969_low_13
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 21205609 - 21205753
Alignment:
| Q |
145 |
gacatcacaggagatcgatgccgttctattctagattgtcctcaagacaagtgtttccctcttctatctttagtatgcgtaaattttatttgtgattgtc |
244 |
Q |
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| T |
21205609 |
gacatcacagaagatcgatgccgttctattctagattgtcctcaagacaagtgtttccctcttctaactttagtatgcacaaattttatttgtgattgtc |
21205708 |
T |
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| Q |
245 |
tgcacgtgtagcaaataaaatcaaaaataatttcttagtaaaaac |
289 |
Q |
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| T |
21205709 |
tgcacgtgtagcaaataaaatcaaaaataatttcttagtaaaaac |
21205753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 27271102 - 27271241
Alignment:
| Q |
145 |
gacatcacaggagatcgatgccgttctattctagattgtcctcaagacaagtgtttccctcttctatctttagtatgcgtaaattttatttgtgattgtc |
244 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
27271102 |
gacatcacagcagatcgatgccgttctattctagattgtcctcaagacaagtgtttccctcttctaactttagtatgcgtaaattttgcttgtgattgtc |
27271201 |
T |
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| Q |
245 |
tgcacgtgtagcaaataaaatcaaaaataatttcttagta |
284 |
Q |
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| T |
27271202 |
tgcacgtgtagcaaataaaatcaaaaataattccttagta |
27271241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 21205480 - 21205547
Alignment:
| Q |
14 |
caaaggtggtaagtttgtttttgacagaaatcgcggtaagttaatactctctattttctttctttcaa |
81 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21205480 |
caaaggcggtaagtttgtttttgacagaaatcgcggtaagttaatactctctgttttctttctttcaa |
21205547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 27270973 - 27271040
Alignment:
| Q |
14 |
caaaggtggtaagtttgtttttgacagaaatcgcggtaagttaatactctctattttctttctttcaa |
81 |
Q |
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|||||| | ||||||||||||||||| |||| ||||||| |||||||| ||| ||||||||||||||| |
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| T |
27270973 |
caaaggcgataagtttgtttttgacaaaaatggcggtaaattaatactttctgttttctttctttcaa |
27271040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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