View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20969_low_15 (Length: 283)

Name: NF20969_low_15
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20969_low_15
NF20969_low_15
[»] chr2 (6 HSPs)
chr2 (1-268)||(23859705-23859972)
chr2 (121-272)||(34576802-34576953)
chr2 (54-268)||(31486664-31486861)
chr2 (54-268)||(31488948-31489145)
chr2 (234-268)||(8995253-8995287)
chr2 (121-178)||(29801819-29801876)
[»] chr7 (14 HSPs)
chr7 (122-268)||(42678776-42678917)
chr7 (63-202)||(8414751-8414884)
chr7 (117-208)||(16535243-16535334)
chr7 (117-208)||(16630328-16630419)
chr7 (119-208)||(16497061-16497150)
chr7 (63-202)||(36464484-36464617)
chr7 (63-268)||(3934744-3934932)
chr7 (121-202)||(8733755-8733834)
chr7 (65-268)||(3932507-3932693)
chr7 (135-268)||(19788927-19789047)
chr7 (66-202)||(3051993-3052127)
chr7 (135-268)||(19786621-19786741)
chr7 (226-268)||(8733703-8733745)
chr7 (215-268)||(36464429-36464482)
[»] chr5 (8 HSPs)
chr5 (122-268)||(1779423-1779564)
chr5 (55-268)||(23164446-23164642)
chr5 (63-268)||(37207662-37207850)
chr5 (54-268)||(22600693-22600890)
chr5 (55-202)||(11852426-11852567)
chr5 (127-264)||(1779661-1779793)
chr5 (54-202)||(11850168-11850310)
chr5 (192-268)||(15468986-15469062)
[»] chr3 (4 HSPs)
chr3 (65-268)||(18966317-18966518)
chr3 (172-264)||(1701061-1701153)
chr3 (65-108)||(39578235-39578278)
chr3 (176-268)||(8535464-8535557)
[»] chr8 (8 HSPs)
chr8 (54-268)||(36377388-36377585)
chr8 (55-268)||(36379673-36379869)
chr8 (63-204)||(21268388-21268523)
chr8 (134-185)||(4876849-4876900)
chr8 (134-185)||(4879177-4879228)
chr8 (215-268)||(4876917-4876970)
chr8 (215-268)||(4879245-4879298)
chr8 (134-183)||(24519432-24519481)
[»] chr1 (8 HSPs)
chr1 (63-268)||(29833281-29833469)
chr1 (130-268)||(8933755-8933888)
chr1 (54-202)||(734839-734981)
chr1 (63-268)||(2404033-2404221)
chr1 (199-268)||(18353719-18353788)
chr1 (121-185)||(419215-419279)
chr1 (125-185)||(2416674-2416734)
chr1 (215-268)||(734784-734837)
[»] chr6 (1 HSPs)
chr6 (134-268)||(21199146-21199275)
[»] chr4 (10 HSPs)
chr4 (167-268)||(43179515-43179617)
chr4 (63-202)||(45166861-45166994)
chr4 (134-202)||(50856022-50856088)
chr4 (65-202)||(45161971-45162102)
chr4 (134-268)||(42468645-42468766)
chr4 (134-268)||(42470974-42471095)
chr4 (205-265)||(8739308-8739368)
chr4 (232-272)||(19429279-19429319)
chr4 (215-268)||(50855967-50856020)
chr4 (54-114)||(8739233-8739293)
[»] scaffold0312 (1 HSPs)
scaffold0312 (121-185)||(11292-11356)
[»] scaffold0050 (2 HSPs)
scaffold0050 (54-152)||(31433-31527)
scaffold0050 (196-264)||(29246-29314)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-150; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 23859705 - 23859972
Alignment:
Q  1 taacacagtagcacttccatttaatgtaattttctctaacttgcataatatacatgatagataatgatgaagaaagatatggaacactctagaatactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859705 taacacagtagcacttccatttaatgtaattttctctaacttgcataatatacatgatagataatgatgaagaaagatatggaacactctagaatactaa 23859804  T
Q  101 tgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859805 tgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaat 23859904  T
Q  201 aaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23859905 aaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 23859972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 34576953 - 34576802
Alignment:
Q  121 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactag 220  Q
    |||||||||||||||||||||||||| |||||||| |||||||   |||||  |||||||||||  ||| ||||||||||||||||||||||  ||||||    
T  34576953 ctctagaacactaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaataaaattacgcactag 34576854  T
Q  221 agaaatcttagcttttctagatccttctagtcttatgaactagagtattcat 272  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  34576853 agaaatcttaacttttctagatccttctagtcatatgaactagagtattcat 34576802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 31486664 - 31486861
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 153  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| |||||    |||||||||| |||| |||||||||| | ||||||    
T  31486664 atgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtggaa----gcctctagaagactagagaataatatagaagtctc 31486759  T
Q  154 tagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtct 253  Q
    |||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| ||    
T  31486760 tagaatactagggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggct 31486846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 31488948 - 31489145
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 153  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    ||||| || ||||||||||||||| | ||||||    
T  31488948 atgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctaaaagactaaagaataatatagaagtctc 31489043  T
Q  154 tagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtct 253  Q
    |||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||||||||||||||||||||||  ||    
T  31489044 tagaatactagggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttagcttttctagatccttctaagct 31489130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 8995287 - 8995253
Alignment:
Q  234 tttctagatccttctagtcttatgaactagagtat 268  Q
    ||||||||||||||||||| |||||||||||||||    
T  8995287 tttctagatccttctagtcatatgaactagagtat 8995253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 29801819 - 29801876
Alignment:
Q  121 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaa 178  Q
    ||||||||||| ||||||||||| || ||| ||||||||||||   ||||||||||||    
T  29801819 ctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataaggaa 29801876  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 42678917 - 42678776
Alignment:
Q  122 tctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactaga 221  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||      ||||||     
T  42678917 tctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaataaa-----gcactagg 42678823  T
Q  222 gaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
     ||||||||   ||||||||||||||||||| ||||| |||||||||    
T  42678822 aaaatcttaatgtttctagatccttctagtcatatgacctagagtat 42678776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 8414884 - 8414751
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| ||    ||||||||||||||||||||||| | |||||||||||||||    
T  8414884 aatgatgaagaataatatggaagactctagaatactagagaataatgtggaagta----tctagaacactaaagaataatatagaagtctctagaatact 8414789  T
Q  163 atgaaataataaggaagctactaaacattctactaaataa 202  Q
    | | |||||||||||| |||||| |||  |||||||||||    
T  8414788 agggaataataaggaaactactagaca--ctactaaataa 8414751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 16535334 - 16535243
Alignment:
Q  117 aagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaa 208  Q
    |||||||||||| | ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  16535334 aagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaa 16535243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 16630328 - 16630419
Alignment:
Q  117 aagcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaa 208  Q
    |||||||||||| | ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  16630328 aagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaagctactagacactctactaaataaaataaa 16630419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 16497150 - 16497061
Alignment:
Q  119 gcctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaa 208  Q
    |||||||||| | ||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  16497150 gcctctagaataataaagaataatgtggaagtttctagaatactatggaataataaggaagctactagacactctactaaataaaataaa 16497061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 36464617 - 36464484
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||| ||  |||||||| ||||||||||||||  ||||||| ||||| |    ||||||||||||||| |||||||| | |||||||||||||||    
T  36464617 aatgatgaaaaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaataataatatagaagtctctagaatact 36464522  T
Q  163 atgaaataataaggaagctactaaacattctactaaataa 202  Q
    | | ||||||||||||||||||| |||  |||||||||||    
T  36464521 agggaataataaggaagctactagaca--ctactaaataa 36464484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 3934744 - 3934932
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||||| || ||||||||||||    
T  3934744 aatgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagt----ctctagaagactaaagaataatatggaagactctagaatact 3934839  T
Q  163 atgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaacta 262  Q
    | | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| ||||    
T  3934840 agggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtacta 3934926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 8733834 - 8733755
Alignment:
Q  121 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataa 202  Q
    |||||||||||||||||||||||| | |||||||||||||||| | ||||||||||||||||||| |||  |||||||||||    
T  8733834 ctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagaca--ctactaaataa 8733755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 268
Target Start/End: Original strand, 3932507 - 3932693
Alignment:
Q  65 tgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactat 164  Q
    ||||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||||| || |||||||||||||     
T  3932507 tgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagt----ctctagaagactaaagaataatatggaagactctagaatactag 3932602  T
Q  165 gaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactaga 264  Q
    | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| ||||||    
T  3932603 ggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtactaga 3932689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 19788927 - 19789047
Alignment:
Q  135 agaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagctt 234  Q
    |||||||| ||| |||||||||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| |||    
T  19788927 agaataatgtggaagtctctagaatactagggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaactt 19789013  T
Q  235 ttctagatccttctagtcttatgaactagagtat 268  Q
    |||||||||||||||| |||||| ||||||||||    
T  19789014 ttctagatccttctaggcttatgtactagagtat 19789047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 3051993 - 3052127
Alignment:
Q  66 gatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatac---- 161  Q
    |||||||||  |||||||| ||||||||||||||  ||||||| | ||| |    ||||| |||||||||||||||||| | ||||||||||||||        
T  3051993 gatgaagaataatatggaagactctagaatactagagaataatgtcgaagt----ctctataacactaaagaataatatagaagtctctagaatactaga 3052088  T
Q  162 tatgaaataataaggaagctactaaacattctactaaataa 202  Q
    ||  |||||||||||||||||||| |||  |||||||||||    
T  3052089 taataaataataaggaagctactagaca--ctactaaataa 3052127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 268
Target Start/End: Original strand, 19786621 - 19786741
Alignment:
Q  135 agaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagctt 234  Q
    |||||||| ||| ||||||||||||| || | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| |||    
T  19786621 agaataatgtggaagtctctagaatattagggaataataaggaagctactagaca--ctactaaataag-----------cactagggaagtcttaactt 19786707  T
Q  235 ttctagatccttctagtcttatgaactagagtat 268  Q
    |||||||||||||||| |||||| ||||||||||    
T  19786708 ttctagatccttctaggcttatgtactagagtat 19786741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 8733745 - 8733703
Alignment:
Q  226 tcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||    
T  8733745 tcttaacttttctagatccttctaggcttatgtactagagtat 8733703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 36464482 - 36464429
Alignment:
Q  215 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||| ||| ||||  |||||||||||||||||||| ||||| ||||||||||    
T  36464482 cactagggaagtcttgacttttctagatccttctagttttatgtactagagtat 36464429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 268
Target Start/End: Complemental strand, 1779564 - 1779423
Alignment:
Q  122 tctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactaga 221  Q
    ||||||| ||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||| ||| || |||||||||||||||      |||||||    
T  1779564 tctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaataaa-----gcactaga 1779470  T
Q  222 gaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
     ||||||||   ||||||||||||||||||| |||||||||||||||    
T  1779469 aaaatcttaatgtttctagatccttctagtcatatgaactagagtat 1779423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 268
Target Start/End: Complemental strand, 23164642 - 23164446
Alignment:
Q  55 tgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctct 154  Q
    ||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||    
T  23164642 tgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctct 23164547  T
Q  155 agaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtctt 254  Q
    ||||||||| | ||||||||||||||||||| |||  |||||||||||           ||||||| ||| ||||| ||||||||||||||||||| |||    
T  23164546 agaatactagggaataataaggaagctactagaca--ctactaaataa-----------acactagggaagtcttaacttttctagatccttctaggctt 23164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 268
Target Start/End: Original strand, 37207662 - 37207850
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | ||||| |||||||||    
T  37207662 aatgatgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctgtagaatact 37207757  T
Q  163 atgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaacta 262  Q
    | | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| ||||    
T  37207758 agggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtacta 37207844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 22600693 - 22600890
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 153  Q
    |||||||| ||||||||||||  |||||||| ||||||||||| ||  ||||||| ||||| |    |||||||| |||||| |||||||| | ||||||    
T  22600693 atgatagagaatgatgaagaataatatggaagactctagaatattagggaataatgtggaagt----ctctagaagactaaataataatatagaagtctc 22600788  T
Q  154 tagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtct 253  Q
    |||||||||||| ||||||||| ||||||||  |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| ||    
T  22600789 tagaatactatggaataataagaaagctacttgaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggct 22600875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 11852567 - 11852426
Alignment:
Q  55 tgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctct 154  Q
    ||||||| |||| |||||||  |||||||| ||||||||||||||   ||||||  |||| |    |||||||| ||||||||||||||| | |||||||    
T  11852567 tgatagagaatggtgaagaataatatggaagactctagaatactatgaaataatgaggaagt----ctctagaagactaaagaataatatagaagtctct 11852472  T
Q  155 agaatactatgaaataataaggaagctactaaacattctactaaataa 202  Q
    ||||||||| | ||||||||||||||||||| |||  |||||||||||    
T  11852471 agaatactagggaataataaggaagctactagaca--ctactaaataa 11852426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 264
Target Start/End: Complemental strand, 1779793 - 1779661
Alignment:
Q  127 aacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaat 226  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||   |||||||||| ||||||||||  ||||||||||      | |||| |||||    
T  1779793 aacactaaagaataatatggaagtctctagaatactaaagaataatgtcgaagctactagacattctactggataaaataaa-----gcgctagggaaat 1779699  T
Q  227 cttagcttttctagatccttctagtcttatgaactaga 264  Q
    ||||   ||||||||||||||||||| |||||||||||    
T  1779698 cttaatgtttctagatccttctagtcatatgaactaga 1779661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 11850310 - 11850168
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 153  Q
    |||||||| |||| |||||||  |||||||| ||||| ||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | ||||||    
T  11850310 atgatagagaatggtgaagaataatatggaagactcttgaatactatggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctc 11850215  T
Q  154 tagaatactatgaaataataaggaagctactaaacattctactaaataa 202  Q
    || ||||||| | ||||||||| ||||||||| |||  |||||||||||    
T  11850214 taaaatactagggaataataagaaagctactagaca--ctactaaataa 11850168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 15468986 - 15469062
Alignment:
Q  192 ctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    ||||||||||| ||||||| |  ||||||  |||| ||| ||||||||||||| ||||||| |||||| ||| ||||    
T  15468986 ctactaaataagataaaataaagcactaggaaaatattaacttttctagatccatctagtcatatgaattagtgtat 15469062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 18966518 - 18966317
Alignment:
Q  65 tgatgaagaaagatatggaa--cactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||  ||||||||  | |||||||||||||| ||||||| ||||| |    ||||||||||| ||||||||||| || |||||||||||||||    
T  18966518 tgatgaagaataatatggaagtctctctagaatactaaagaataatgtggaagt----ctctagaacaccaaagaataatagggaagtctctagaatact 18966423  T
Q  163 atgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaacta 262  Q
    |   |||||||||| |||||||| | | |||||||||| |||||||||||  ||||||  ||||||||   ||||||||||||||||||| || | ||||    
T  18966422 agataataataaggtagctactagatactctactaaatgaaataaaattaagcactaggaaaatcttaatgtttctagatccttctagtcatacgtacta 18966323  T
Q  263 gagtat 268  Q
    ||||||    
T  18966322 gagtat 18966317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 1701061 - 1701153
Alignment:
Q  172 taaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactaga 264  Q
    |||||||||| ||| ||| | |||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||| ||||    
T  1701061 taaggaagcttctagacactgtactaaataagataaaattaaacactagggaaatcttaacttttctagatccttctagtcatatgaattaga 1701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 39578235 - 39578278
Alignment:
Q  65 tgatgaagaaagatatggaacactctagaatactaatgaataat 108  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||    
T  39578235 tgatgaagaatgatatggaagactctagaatactaaagaataat 39578278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 8535464 - 8535557
Alignment:
Q  176 gaagctactaaacattctactaaataaaataaaattagacactagagaaatctta-gcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||| ||| ||| |||||||||||| ||||||| |  ||||||| ||||||||   |||| ||||||||||||||| ||| ||||| |||||    
T  8535464 gaagcttctagacactctactaaataagataaaataaagcactagaaaaatcttatttttttttagatccttctagtcatataaactaaagtat 8535557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 36377585 - 36377388
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 153  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||| ||||||| ||||| |    |||||||| ||||||||||||||| | ||||||    
T  36377585 atgatagagaatggtgaagaataatatggaagactctagaatactaaggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctc 36377490  T
Q  154 tagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtct 253  Q
    |||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| ||    
T  36377489 tagaatactagggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggct 36377403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 268
Target Start/End: Complemental strand, 36379869 - 36379673
Alignment:
Q  55 tgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctct 154  Q
    ||||||| |||| |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||    
T  36379869 tgatagagaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctctagaagactaaagaataatatagaagtctct 36379774  T
Q  155 agaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtctt 254  Q
    ||||||||| | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||    
T  36379773 agaatactagggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggctt 36379687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 63 - 204
Target Start/End: Complemental strand, 21268523 - 21268388
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    |||| |||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||||||||||||||||||| | |||||||||||||||    
T  21268523 aatggtgaagaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaagaataatatagaagtctctagaatact 21268428  T
Q  163 atgaaataataaggaagctactaaacattctactaaataaaa 204  Q
    | | ||||||||||||||||||| |||  |||||||||||||    
T  21268427 agggaataataaggaagctactagaca--ctactaaataaaa 21268388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 4876849 - 4876900
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctacta 185  Q
    ||||||||||||| || ||||||||||||  | |||||||||||||||||||    
T  4876849 aagaataatatggaagactctagaatactggggaataataaggaagctacta 4876900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 4879177 - 4879228
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctacta 185  Q
    ||||||||||||| || ||||||||||||  | |||||||||||||||||||    
T  4879177 aagaataatatggaagactctagaatactggggaataataaggaagctacta 4879228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 4876917 - 4876970
Alignment:
Q  215 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||| ||| ||||| ||||||||||||||||||| |||||| |||| |||||    
T  4876917 cactagggaagtcttaacttttctagatccttctaggcttatgtactatagtat 4876970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 4879245 - 4879298
Alignment:
Q  215 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||| ||| ||||| ||||||||||||||||||| |||||| |||| |||||    
T  4879245 cactagggaagtcttaacttttctagatccttctaggcttatgtactatagtat 4879298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 24519481 - 24519432
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctac 183  Q
    ||||||||||||| || ||||||||||||  | |||||||||||||||||    
T  24519481 aagaataatatggaagactctagaatactggggaataataaggaagctac 24519432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 29833469 - 29833281
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    |||||||||||||||||||||||| | |||||||||||||||    
T  29833469 aatgatgaagaataatatggaagactctagaatactagagaataatgtggaagt----ctctagaacactaaagaataatatagaagtctctagaatact 29833374  T
Q  163 atgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaacta 262  Q
    | | ||||||||||||||||||| |||  |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| ||||    
T  29833373 agggaataataaggaagctactagaca--ctactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtacta 29833287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 8933888 - 8933755
Alignment:
Q  130 actaaagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatctt 229  Q
    ||||||||| ||||||| |||||||| ||||||||| |||||||||||||||| || ||| ||||||||||||||||||      ||||||  |||||||    
T  8933888 actaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaataaag-----cactaggaaaatctt 8933794  T
Q  230 agcttttctagatccttctagtcttatgaactagagtat 268  Q
    |   ||||||||||||||||||| |||||||||||||||    
T  8933793 aatgtttctagatccttctagtcatatgaactagagtat 8933755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 734981 - 734839
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctc 153  Q
    |||||||| ||||||||||||  |||||||| ||||||||||||||  ||||||| ||||| |    || ||||| ||||||||||||||| | ||||||    
T  734981 atgatagagaatgatgaagaataatatggaagactctagaatactagggaataatgtggaagt----ctttagaagactaaagaataatatagaagtctc 734886  T
Q  154 tagaatactatgaaataataaggaagctactaaacattctactaaataa 202  Q
    |||||||||| | ||||| ||||||||||||| |||  |||||||||||    
T  734885 tagaatactagggaataacaaggaagctactagaca--ctactaaataa 734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 2404221 - 2404033
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||||  | || ||| ||||||| ||||||  ||||||| ||||| |    |||||||| ||||||||||||||| | |||||||||||||||    
T  2404221 aatgatgaagaataaaatagaagactctaggatactagagaataatgtggaaat----ctctagaagactaaagaataatatagaagtctctagaatact 2404126  T
Q  163 atgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaacta 262  Q
    | | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||||||||||||||||||| |||||| ||||    
T  2404125 agggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaacttttctagatccttctaggcttatgtacta 2404039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 18353719 - 18353788
Alignment:
Q  199 ataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||||||||||   ||||||  |||||||| ||||||||||||||||||||| |||||||||||||||    
T  18353719 ataaaataaaattgagcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtat 18353788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 419279 - 419215
Alignment:
Q  121 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctacta 185  Q
    |||||||||||||||||||||||||| |||||||| |||  ||   |||||||||||||||||||    
T  419279 ctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctacta 419215  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 2416734 - 2416674
Alignment:
Q  125 agaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctacta 185  Q
    |||| |||| |||||||||| | | |||||||||||||| | |||||||||||||||||||    
T  2416734 agaagactacagaataatatagaactctctagaatactagggaataataaggaagctacta 2416674  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 734837 - 734784
Alignment:
Q  215 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||| ||| ||||| |||||||||||||||||||  ||||| ||||||||||    
T  734837 cactagggaagtcttaacttttctagatccttctaggtttatgtactagagtat 734784  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 21199146 - 21199275
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagct 233  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||      ||||||  ||||||||       
T  21199146 aagaataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaag-----cactagttaaatcttaatg 21199240  T
Q  234 tttctagatccttctagtcttatgaactagagtat 268  Q
    ||||||||||||||||||| |||||||| ||||||    
T  21199241 tttctagatccttctagtcatatgaactggagtat 21199275  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 43179515 - 43179617
Alignment:
Q  167 aataataaggaagctactaaacattctactaaataaaat-aaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 265  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||  || || |||||||||| ||||| | ||||||||||||| ||||||||||||    
T  43179515 aataataaggaagctactagacactctactaaataaaataaaaattaagcattaaagaaatcttaacttttttggatccttctagtcatatgaactagag 43179614  T
Q  266 tat 268  Q
    |||    
T  43179615 tat 43179617  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 45166861 - 45166994
Alignment:
Q  63 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 162  Q
    ||||||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||| | ||||| |||||||||    
T  45166861 aatgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagt----ctctagaagactaaagaataatatagaagtctttagaatact 45166956  T
Q  163 atgaaataataaggaagctactaaacattctactaaataa 202  Q
    | | ||||||||||||||||||| |||  |||||||||||    
T  45166957 agggaataataaggaagctactagaca--ctactaaataa 45166994  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 50856088 - 50856022
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataa 202  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||  |||||||||||    
T  50856088 aagaataatatggaagtctctagaatactatggaataataaggaagctactagaca--ctactaaataa 50856022  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 45161971 - 45162102
Alignment:
Q  65 tgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatactat 164  Q
    ||||||||||  ||||||||  |||||||||  | | ||||||||||||| |    |||||||| ||||||||||||||| | ||||| ||||||||||     
T  45161971 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagt----ctctagaagactaaagaataatatagaagtctttagaatactag 45162066  T
Q  165 gaaataataaggaagctactaaacattctactaaataa 202  Q
    | ||||||||| ||||||||| |||  |||||||||||    
T  45162067 ggaataataagaaagctactagaca--ctactaaataa 45162102  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 42468766 - 42468645
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagct 233  Q
    ||||||||||||| || ||||||||||||  | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||    
T  42468766 aagaataatatggaagactctagaatactggggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaact 42468680  T
Q  234 tttctagatccttctagtcttatgaactagagtat 268  Q
    ||||||||||||||||| |||||| ||||||||||    
T  42468679 tttctagatccttctaggcttatgtactagagtat 42468645  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 42471095 - 42470974
Alignment:
Q  134 aagaataatatgggagtctctagaatactatgaaataataaggaagctactaaacattctactaaataaaataaaattagacactagagaaatcttagct 233  Q
    ||||||||||||| || ||||||||||||  | ||||||||||||||||||  | || |||||||||||            |||||| ||| ||||| ||    
T  42471095 aagaataatatggaagactctagaatacttgggaataataaggaagctact--agatactactaaataa-----------gcactagggaagtcttaact 42471009  T
Q  234 tttctagatccttctagtcttatgaactagagtat 268  Q
    ||||||||||||||||| |||||| ||||||||||    
T  42471008 tttctagatccttctaggcttatgtactagagtat 42470974  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 8739308 - 8739368
Alignment:
Q  205 taaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactagag 265  Q
    ||||||||  |||||| |||||||||   ||||||||||||||||||| ||||||||||||    
T  8739308 taaaattatgcactagggaaatcttaatgtttctagatccttctagtcatatgaactagag 8739368  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 19429319 - 19429279
Alignment:
Q  232 cttttctagatccttctagtcttatgaactagagtattcat 272  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  19429319 cttttctagatccttctagttttatgtactagagtattcat 19429279  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 50856020 - 50855967
Alignment:
Q  215 cactagagaaatcttagcttttctagatccttctagtcttatgaactagagtat 268  Q
    |||||| ||| ||||| ||||||||||||||||||| |||||| || |||||||    
T  50856020 cactagggaagtcttaacttttctagatccttctaggcttatgtaccagagtat 50855967  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 8739233 - 8739293
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaa 114  Q
    |||||||| ||||||||||||  || ||||   ||||||||||||||||||||||| ||||    
T  8739233 atgatagagaatgatgaagaataatgtggatgtctctagaatactaatgaataataaggaa 8739293  T

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Target: scaffold0312 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 11292 - 11356
Alignment:
Q  121 ctctagaacactaaagaataatatgggagtctctagaatactatgaaataataaggaagctacta 185  Q
    |||||||||||||||||||||||||| |||||||| |||  ||   |||||||||||||||||||    
T  11292 ctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctacta 11356  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 31433 - 31527
Alignment:
Q  54 atgatagataatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtct 152  Q
    |||||| | ||||||||||||  ||||||||| ||||| || ||||| ||| ||| ||||| |    |||||||||||| ||||||||||||| |||||    
T  31433 atgataaagaatgatgaagaataatatggaactctctaaaacactaaagaacaatgtggaagt----ctctagaacactcaagaataatatggaagtct 31527  T

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Target: scaffold0050; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 29246 - 29314
Alignment:
Q  196 taaataaaataaaattagacactagagaaatcttagcttttctagatccttctagtcttatgaactaga 264  Q
    ||||| |||| ||||||  |||||| |||||||||   ||||||||||||||||||| |||| ||||||    
T  29246 taaattaaattaaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactaga 29314  T

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