View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_2 (Length: 786)
Name: NF20969_low_2
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 474 - 772
Target Start/End: Complemental strand, 4787705 - 4787406
Alignment:
| Q |
474 |
tggtactaatgatgattccaaagcc-aacatatatcgttccattgatttatttatttatatatgcttacaaatttgaatagggaatctaacatttcaaaa |
572 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4787705 |
tggtactaatgatgattccaaagcccaacatatatcgttccattgatttatttatttatatatgcttacaaattagaatagggaatctaacatttcaaaa |
4787606 |
T |
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| Q |
573 |
caacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatatttg |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4787605 |
caacatcaagattacccacacaaacaaaacctagaagcattaaaccgtaatttattcttgatctataaaatggaactaatgcttcgttcaattatatttg |
4787506 |
T |
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| Q |
673 |
actggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccatgacgtgcccc |
772 |
Q |
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| T |
4787505 |
actggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccatgacgtgcccc |
4787406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 74 - 458
Target Start/End: Complemental strand, 4789216 - 4788833
Alignment:
| Q |
74 |
ctatagagcaattaattttcaaagaatttcaaactagacaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcaactacaatc |
173 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || |
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| T |
4789216 |
ctatagagcaattaattttcaaagaatttcaaactaggcaataaaagtgttatcttttgtttttaagtttcttactaaatgtttttcctcgatcagagtc |
4789117 |
T |
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| Q |
174 |
cgagcaaaaactccactatgaatcaacgtttacaatggtgcaaaatacaaaagattaagactcactcacgcaacaaactcaccataattcactattgttt |
273 |
Q |
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| T |
4789116 |
cgagcaaaaactccactatgaatcaacgtttacaatggtgtgaaatcacaaagcttaagactcattctcgcaacaaactcgccagaattcactcttgttt |
4789017 |
T |
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| Q |
274 |
tgtcactccttttactccatgtgcttgttagacttgacactgatttcattctagcaatttaacaaccaaaggaatgcatnnnnnnnnnnnnnnnnngatt |
373 |
Q |
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| T |
4789016 |
tgtcact-cttttactctatgtgtttgttagacttgaaactgatttcattctagcaatttaacaaccaaaggaatgcattatatatttatatatatgatt |
4788918 |
T |
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| Q |
374 |
gcttctagctcaagctatctagatccaacggttatagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
458 |
Q |
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| T |
4788917 |
gcttctagctcaagctatctagctccaacggttatagcaaactaattactgtgaacctcagtcaccatgacagttaaaagcagtt |
4788833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 663 - 772
Target Start/End: Complemental strand, 4782769 - 4782660
Alignment:
| Q |
663 |
attatatttgactggattatatgcccattcattgattgcacacaccccatactctttattagtgttccttttgatatgcatataaccctccattccccat |
762 |
Q |
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||||||||||||||||||||| |||||| ||| || |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4782769 |
attatatttgactggattataagcccatgaatttatagcacacaccccatactttttatttgtgttccttttgatatgcatataaccctccattccccat |
4782670 |
T |
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| Q |
763 |
gacgtgcccc |
772 |
Q |
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|||||||||| |
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| T |
4782669 |
gacgtgcccc |
4782660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4792451 - 4792380
Alignment:
| Q |
1 |
accaaaactttcccagttgaggcttttgctacggaacagtaacagatgcaaccaaatatcatgtgactatag |
72 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
4792451 |
accaaaactttcccagttgaggcttttgctacgggacagtaatagatgcaactaaatatcatgtgactatag |
4792380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 409
Target Start/End: Complemental strand, 20724342 - 20724308
Alignment:
| Q |
375 |
cttctagctcaagctatctagatccaacggttata |
409 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
20724342 |
cttctagctcaagctatctagttccaacggttata |
20724308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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