View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_21 (Length: 247)
Name: NF20969_low_21
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 40279931 - 40279707
Alignment:
| Q |
1 |
aagcaatgaatccattgattacaaagaagagaaatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagta |
100 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
40279931 |
aagcaatgcatccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagta |
40279832 |
T |
|
| Q |
101 |
tttttgtaaacatgcagatatacacagaacatgtgccaaagatagattgatatattcatcttatcttggtttatgcaaacagctccaaccaaactcaccg |
200 |
Q |
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| T |
40279831 |
tttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgccc |
40279732 |
T |
|
| Q |
201 |
ttcctttcatagagtactacaaatt |
225 |
Q |
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|||||| |||||||||||||||||| |
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| T |
40279731 |
ttccttccatagagtactacaaatt |
40279707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40458419 - 40458643
Alignment:
| Q |
1 |
aagcaatgaatccattgattacaaagaagagaaatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagta |
100 |
Q |
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| T |
40458419 |
aagcaatgcatccattgatgacaaagaagagaaatataaattggttgttcttgctgttgggtcaaatgataggatgttgcaatcttgatcaattgaagta |
40458518 |
T |
|
| Q |
101 |
tttttgtaaacatgcagatatacacagaacatgtgccaaagatagattgatatattcatcttatcttggtttatgcaaacagctccaaccaaactcaccg |
200 |
Q |
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| T |
40458519 |
tttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacagctccaaccaaacacgccc |
40458618 |
T |
|
| Q |
201 |
ttcctttcatagagtactacaaatt |
225 |
Q |
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|||||| |||||||||||||||||| |
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| T |
40458619 |
ttccttccatagagtactacaaatt |
40458643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40284892 - 40284651
Alignment:
| Q |
1 |
aagcaatgaatccattgattacaaagaagagaaatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagta |
100 |
Q |
| |
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|||||||| |||||||||| |||||||||||||| || ||||||||||| |||||||| ||||||||||||| || |||||||| |||||||||||||| |
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| T |
40284892 |
aagcaatgcatccattgatgacaaagaagagaaacatcaattggttgttcttgctgttaggtcaaatgatagggtgttgcaagctcgatcaattgaagta |
40284793 |
T |
|
| Q |
101 |
tttttgtaaacatgcagatatacacagaacatgtgccaaagatagattgatatattcatcttatcttggtttatgcaaacagctccaaccaaactcaccg |
200 |
Q |
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| T |
40284792 |
tttctgcaaacatgctgatatacacagaacaggtgccaaaaatagattgatttattcaacttattttggtttatgcaaacaactccaaccaaacaaatcc |
40284693 |
T |
|
| Q |
201 |
ttcctttcatagagtactacaaattcattatattttctgtgc |
242 |
Q |
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| T |
40284692 |
ttccttccatagagtactacaaattcattatattttctgtgc |
40284651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 39600570 - 39600463
Alignment:
| Q |
6 |
atgaatccattgattacaaagaagagaaatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagtattttt |
105 |
Q |
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||||||||| | || ||||||||||||| || ||||||||||||||| ||||| |||| ||||| || || ||||||||| | || ||||| ||||| | |
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| T |
39600570 |
atgaatccaataatcacaaagaagagaacaatcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttct |
39600471 |
T |
|
| Q |
106 |
gtaaacat |
113 |
Q |
| |
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| T |
39600470 |
gcaaacat |
39600463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 39781403 - 39781500
Alignment:
| Q |
6 |
atgaatccattgattacaaagaagagaaatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagtattt |
103 |
Q |
| |
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||||||||| | || ||||||||||||| || ||||||||||| ||| | ||| |||| ||||| || || ||||||||| | || ||||||||||| |
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| T |
39781403 |
atgaatccaataatcacaaagaagagaaccattaattggttgttcttgttattgggtcagatgattgggtgttgcaagcttcaacatttgaagtattt |
39781500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 25044476 - 25044394
Alignment:
| Q |
24 |
aagaagagaaatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagtatttttg |
106 |
Q |
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||||||| ||||| |||||||||||| |||||||| | |||||| | || || ||||| ||| | ||||||||||||||||| |
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| T |
25044476 |
aagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttg |
25044394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 25040729 - 25040656
Alignment:
| Q |
33 |
aatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagtatttttg |
106 |
Q |
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| T |
25040729 |
aatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttg |
25040656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 28649944 - 28649871
Alignment:
| Q |
33 |
aatataaattggttgtttttgctgttgagtcaaatgataggatgctgcaagcttgatcaattgaagtatttttg |
106 |
Q |
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||||| ||||||||||||||| ||||| | |||||| | || || ||||| ||| | ||||||||||||||||| |
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| T |
28649944 |
aatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttg |
28649871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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