View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20969_low_24 (Length: 220)

Name: NF20969_low_24
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20969_low_24
NF20969_low_24
[»] chr5 (5 HSPs)
chr5 (89-193)||(16022274-16022378)
chr5 (80-193)||(14389758-14389871)
chr5 (146-197)||(14368549-14368600)
chr5 (77-127)||(13881418-13881468)
chr5 (76-123)||(13856742-13856789)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 16022378 - 16022274
Alignment:
Q  89 tagtgttatatgttctgtaacatggtttatttcatcgcatacaccaaaaccaaaaatactttctattcaactcatggattgtggaaatgataagcatgaa 188  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||||||||||| | ||| ||||||||||||||||| ||||||||||| |||||||||    
T  16022378 tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaactcatggactgtggaaatgagaagcatgaa 16022279  T
Q  189 atgac 193  Q
     ||||    
T  16022278 gtgac 16022274  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 14389758 - 14389871
Alignment:
Q  80 agttttaagtagtgttatatgttctgtaacatggtttatttcatcgcatacaccaaaaccaaaaatactttctattcaactcatggattgtggaaatgat 179  Q
    ||||||||| ||||||||||||| ||||||||||||||||| || |||  ||||||||||||| | ||||||||||||| |||| |||| |||||||||     
T  14389758 agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattcaattcattgattttggaaatgaa 14389857  T
Q  180 aagcatgaaatgac 193  Q
    ||||||||| ||||    
T  14389858 aagcatgaagtgac 14389871  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 14368549 - 14368600
Alignment:
Q  146 actttctattcaactcatggattgtggaaatgataagcatgaaatgacacca 197  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  14368549 actttccattcaactcatggattgtggaaatgataagcttgaaatgacacca 14368600  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 13881468 - 13881418
Alignment:
Q  77 tggagttttaagtagtgttatatgttctgtaacatggtttatttcatcgca 127  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  13881468 tggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgca 13881418  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 13856789 - 13856742
Alignment:
Q  76 atggagttttaagtagtgttatatgttctgtaacatggtttatttcat 123  Q
    ||||| ||||||| |||||||||||||  |||||||||||||||||||    
T  13856789 atggaattttaaggagtgttatatgtttggtaacatggtttatttcat 13856742  T

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