View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_4 (Length: 577)
Name: NF20969_low_4
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 49723858 - 49723294
Alignment:
| Q |
1 |
acaatggagatctgaggagatagaaactcaaaggggtcatcattgggcatgtctcctactgcagcctgacactgtgtacactgtgctaaagagtttggca |
100 |
Q |
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| T |
49723858 |
acaatggagatctgaggagatagaaactcaaagggatcatcattgggcatgtctcttactgcagcctgacactgtgtacactgtgctaaagagtttggca |
49723759 |
T |
|
| Q |
101 |
ctttgaaaggaggggctctcacaatattttgaaggtaatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgacctt |
200 |
Q |
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| T |
49723758 |
ctttgaaaggaggaggtctcacaatattttgaaggtcatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgacctt |
49723659 |
T |
|
| Q |
201 |
aagggagcgattgcatttgaacatagttatattaaatttgatgtagaaagaacccaaaggagtagtgcgaggaacaggataattgtgaaaggcttggcat |
300 |
Q |
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| T |
49723658 |
aagggagcgattgcatttgaacatagttatattaaatttgatgtagaaagaacccaaaggagtagtgggaggaacaggataattgtgaaaggcttggcat |
49723559 |
T |
|
| Q |
301 |
tttttggatagcaaatacttccgctgtgtttcatctgagaccgtgatgatattaccttccacgtatgtaactattaaagaatgttaggatggcatctttc |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
49723558 |
tttttggatagcaaatacttctgctgtgtttcatctgagaccgtgatggtattaccttccacgtatgtaactattaaagactgtttggatggcatctttc |
49723459 |
T |
|
| Q |
401 |
ttagttggatgcttttgggagcagatgta-nnnnnnngatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgtgaaagggaagg |
499 |
Q |
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| T |
49723458 |
ctagttggatgctattgggagcagatgtattttttttgatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgtgaaagggaagg |
49723359 |
T |
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| Q |
500 |
taatttggccaagatatccacaactaaaggaggttggacatcctccatcttgagctgaaacatga |
564 |
Q |
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| T |
49723358 |
taatttggccaagatatccacaactaaaggaggttggacatcctccatcttgagctgaaacatga |
49723294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 49673953 - 49673393
Alignment:
| Q |
1 |
acaatggagatctgaggagatagaaactcaaaggggtcatcattgggcatgtctcctactgcagcctgacactgtgtacactgtgctaaagagtttggca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49673953 |
acaatggagatctgaggagatagaaactcaaaggggtcatcattgggcatgtctcttaccgcagcctgacactgtgtacactgtgctaaagagtttggca |
49673854 |
T |
|
| Q |
101 |
ctttgaaaggaggggctctcacaatattttgaaggtaatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgacctt |
200 |
Q |
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| T |
49673853 |
ctttgaaaggaggaggtctcacaatattttgaaggtcatagtagatatcataaccggaacagtttgcgtagttttgaaatgattttggaggggtgacctt |
49673754 |
T |
|
| Q |
201 |
aagggagcgattgcatttgaacatagttatattaaatttgatgtagaaagaacccaaaggagtagtgcgaggaacaggataattgtgaaaggcttggcat |
300 |
Q |
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| T |
49673753 |
aagggagcgattgcatttgaacatagttatattaaatttgaggtagaaagaacccaaaggagtagtgggaggaacaggataattgtgaaaggcttggcat |
49673654 |
T |
|
| Q |
301 |
tttttggatagcaaatacttccgctgtgtttcatctgagaccgtgatgatattaccttccacgtatgtaactattaaagaatgttaggatggcatctttc |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
49673653 |
tttttggatagcaaatacttccgctgtgttttatctgagaccgtgatggtattaccttccacgtatgtaactattaaaggctgtttggatggcatctttc |
49673554 |
T |
|
| Q |
401 |
ttagttggatgcttttgggagcagatgtannnnnnngatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgtgaaagggaaggt |
500 |
Q |
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| T |
49673553 |
ctagttggatgcttttgggagcagatgtattttttttatcacaaccacttatggccagtatgccacagtgagggtattgtgtgactgtgaaagggaaggt |
49673454 |
T |
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| Q |
501 |
aatttggccaagatatccacaactaaaggaggttggacatcctccatcttgagctgaaaca |
561 |
Q |
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| T |
49673453 |
aatttggccaagatatccacaactaaaggaggttggacatcctccatcttgagctgaaaca |
49673393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 560
Target Start/End: Complemental strand, 49250005 - 49249954
Alignment:
| Q |
509 |
caagatatccacaactaaaggaggttggacatcctccatcttgagctgaaac |
560 |
Q |
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|||||| |||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
49250005 |
caagatttccacaactaaacgaggttggacatcttccatcttgagctgaaac |
49249954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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