View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_5 (Length: 395)
Name: NF20969_low_5
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 34043763 - 34044130
Alignment:
| Q |
9 |
ttatactaattattgaagctgtgattggtttttccctaagagatgatggaaaagaaacatttgggttcctaaaactaaataaatttgtattccaatgact |
108 |
Q |
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| T |
34043763 |
ttatactaattattgaagctgtggttggtttttccctaagagacgatggaaaagaaacatttgggttcctaaaactaaataaatttgt-ttccaatgact |
34043861 |
T |
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| Q |
109 |
atgttatagagcattgtttttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataacccctccgatggtaatgagaatgga |
208 |
Q |
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| T |
34043862 |
atgttatagagcattgtttttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataactcctccgatggtaatgagaatgga |
34043961 |
T |
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| Q |
209 |
gcttctcatcctccaagaacttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtgatttt |
308 |
Q |
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| T |
34043962 |
gcttctcattctccaagaacttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtggtttt |
34044061 |
T |
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| Q |
309 |
aaacgccgtagcattaatgagataatagttcaagctcaaggaggtaaacagaattttctatgcattaat |
377 |
Q |
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| T |
34044062 |
aaacgccgtagcattaatgagatcatagttcaagctcaaggaggtaaacagaattttctatgcattaat |
34044130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 27 - 377
Target Start/End: Complemental strand, 4045739 - 4045400
Alignment:
| Q |
27 |
ctgtgattggtttttccctaagagatgatggaaaagaaacatttgggttcctaaaactaaataaatttgtattccaatgactatgttatagagcattgtt |
126 |
Q |
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| T |
4045739 |
ctgtgactggtttttcgctaagagacgatggaaaagaaacatttcggttcctaaaactaaataaatttatattccaat-----------agagcattgat |
4045651 |
T |
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| Q |
127 |
tttaaattcactaaatgaactcactggttgcacagagggacatgaatgtgaggataacccctccgatggtaatgagaatggagcttctcatcctccaaga |
226 |
Q |
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| T |
4045650 |
tttaaattcactaaatgaacttactggttgcacagagggacatgaatgtgaggataactccgccgatggtaatgagaatggagcttctcattctccaaga |
4045551 |
T |
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| Q |
227 |
acttcaatgggcaatgagatcggtgactgccttctgctttctgaaccactattacccttatttcaaaaaattctgtgattttaaacgccgtagcattaat |
326 |
Q |
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| T |
4045550 |
acttcaattgccaatgagatcagtgactgccttctgctttctgaactactattacccttatttcaaaaaattctgtggttttaaacgccatagcattaat |
4045451 |
T |
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| Q |
327 |
gagataatagttcaagctcaaggaggtaaacagaattttctatgcattaat |
377 |
Q |
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| T |
4045450 |
gagatcatagttcaagctcaaggaggtaaacagaattttctatgcattaat |
4045400 |
T |
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