View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_6 (Length: 393)
Name: NF20969_low_6
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 375
Target Start/End: Original strand, 18850990 - 18851352
Alignment:
| Q |
33 |
tgggcataagcaacagaactttgaatagttaaatgcctatctatgtagtgattgaaagatctatcagctgttggggatccacctcggaaggcgatctcgt |
132 |
Q |
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|||| |||||||| | |||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18850990 |
tgggtataagcaatataactatgaagagttaaatgcctatctatgcagtgattgaaagatctctcagctgttggggatccacctcggaaggcgatctcgt |
18851089 |
T |
|
| Q |
133 |
gagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacatgaccaatctgtctagaccaaaagct |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
18851090 |
gagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcatcataaccaatctgtccagaccaaaagct |
18851189 |
T |
|
| Q |
233 |
atgcctcctgcatttgatatataataacaatcatcgataaaatcaactgttattgaacatat--------------------agtgtgcaaataaagata |
312 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||| |||||||||||| |
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| T |
18851190 |
atgcctcctgcatttgatatataataacaattatcgataaaatcaactgctattaaacatattgagatacaatcggtgcgcctgtgttcaaataaagata |
18851289 |
T |
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| Q |
313 |
cgccgattaaatttcaacttgataaatattagatgtttttattgaaatgtttacagtttagtg |
375 |
Q |
| |
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|||||||||||||| |||||||||||| ||| |||| |||||||||||||||||||||||||| |
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| T |
18851290 |
cgccgattaaatttgaacttgataaatgttatatgtatttattgaaatgtttacagtttagtg |
18851352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 50010667 - 50010929
Alignment:
| Q |
33 |
tgggcataagcaacagaactttgaatagttaaatgcctatctatgtagtgattgaaagatctatcagctgttggggatccacctcggaaggcgatctcgt |
132 |
Q |
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|||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
50010667 |
tgggtataagcaacagaactatgaagagttaaacgcctatctatgtagtgattgaaagatctttcagctgttggggatccacctcagaaggtgatctcgt |
50010766 |
T |
|
| Q |
133 |
gagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacatgaccaatctgtctagaccaaaagct |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
50010767 |
gagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagccccagctagcaacataaccaatctgtccagaccaaaagct |
50010866 |
T |
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| Q |
233 |
atgcctcctgcatttgatatat-aataacaatcatcgataaaatcaactgttattgaacatat |
294 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
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| T |
50010867 |
atgcctcctgcatttgatatataaataataatcatcgataaaatcaactgttattaaacatat |
50010929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 18839919 - 18840161
Alignment:
| Q |
38 |
ataagcaacagaactttgaatagttaaatgcctatctatgtagtgattgaaagatctatcagctgttggggatccacctcggaaggcgatctcgtgaggg |
137 |
Q |
| |
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|||||||||| |||| | || ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18839919 |
ataagcaacaaaactatcaagagttaaatg----tctgtgtagtgattgaaagatctctcagctgttggggatccaccttggaaggcgatctcgtgaggg |
18840014 |
T |
|
| Q |
138 |
cacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacatgaccaatctgtctagaccaaaagctatgcc |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
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| T |
18840015 |
cacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacataaccaatctgtccaaaccaaaagctatgcc |
18840114 |
T |
|
| Q |
238 |
tcctgcatttg--atatataataacaatcatcgataaaatcaactgt |
282 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
18840115 |
tcctgtatttgatatatataataacaatcatcgataaaatcaactgt |
18840161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 50010959 - 50011042
Alignment:
| Q |
292 |
tatagtgtgcaaataaagatacgccgattaaatttcaacttgataaatattagatgtttttattgaaatgtttacagtttagtg |
375 |
Q |
| |
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|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
50010959 |
tatagtgttaaaataaagatatgccaattaaatttcaacttgataaatattagatgtttttattgaaatgttttcggtttagtg |
50011042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 44107944 - 44108200
Alignment:
| Q |
33 |
tgggcataagcaacagaactttgaatagttaaatgcctatctatgtagtgattgaaagatctatcagctgttggggatccacctcggaaggcgatctcgt |
132 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||| |
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| T |
44107944 |
tgggtataagcaacagaactatgaagagttaaacgcctatctatgtagtgattgaaagatctttcagctgttggggttccacctcagaaggtgatctcgt |
44108043 |
T |
|
| Q |
133 |
gagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacatgaccaatctgtctagaccaaaagct |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
44108044 |
gagggcacactgtgcagttgttgtttttgggaaagcaatgacatccctgattgaattagccccagctagcaacataaccaatctgtccagaccaaaagct |
44108143 |
T |
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| Q |
233 |
atgcctcctgcatttgatatataataacaatcatcgataaaatcaactgttattgaacatat |
294 |
Q |
| |
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||||||||||||||||||||||| || ||||||| ||||||||||| |||| ||||||| |
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| T |
44108144 |
atgcctcctgcatttgatatata--aataatcatc---aaaatcaactgctattaaacatat |
44108200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 44108245 - 44108314
Alignment:
| Q |
306 |
aaagatacgccgattaaatttcaacttgataaatattagatgtttttattgaaatgtttacagtttagtg |
375 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
44108245 |
aaagatatgccaattaaatttcaacttgataaatattagatgtttttattgaaatgttttcggtttagtg |
44108314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 51295265 - 51295547
Alignment:
| Q |
33 |
tgggcataagcaacagaactttgaatagttaaatgcctatctatgtagtgattgaaagatctatcagctgttggggatccacctcggaaggcgatctcgt |
132 |
Q |
| |
|
|||| |||||||||| |||| | || |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| || |
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| T |
51295265 |
tgggtataagcaacataactattaagagttaaatgcctatctatgtagtgattgaaagatctttcagctgtcggggatccacctcggaaggtgatctggt |
51295364 |
T |
|
| Q |
133 |
gagggcacactgtgcagttgttgtt---------------------tttgggaaagcaatgacatccctgattgaattagcaccagctagcaacatgacc |
211 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51295365 |
gagggcacactgtgcagttcttgtttttgggaaagcagttgatgtttttgggaaagcaatgacatccctgattgaattagcaccagctagcaacataacc |
51295464 |
T |
|
| Q |
212 |
aatctgtctagaccaaaagctatgcctcctgcatttgatatataataacaatcatcgataaaatcaactgttattgaacatat |
294 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
51295465 |
aatctgtccagaccaaaagctatgcctcctgcatttgatatataataacaatcatggataaaatcaactgctattaaacatat |
51295547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 51295582 - 51295661
Alignment:
| Q |
294 |
tagtgtgcaaataaagatacgccgattaaatttcaacttgataaatattagatgtttttattgaaatgtttacagtttag |
373 |
Q |
| |
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|||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||||| |
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| T |
51295582 |
tagtgttcaaataaagatacgccaattaaattccaacttgatgaatataagatgtttttattgagatgtttttagtttag |
51295661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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