View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20969_low_9 (Length: 368)
Name: NF20969_low_9
Description: NF20969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20969_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 19218993 - 19219346
Alignment:
| Q |
20 |
ggtttgggtaacatgttttataatttgaagtttgcaattttctttctgaatttttgagtttattattattatgttataaaaaagtactacta-------- |
111 |
Q |
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| T |
19218993 |
ggtttgggtaacatgttttataatttgaagtctgcaattttctttctgaatttttgagtttattattattatgttataaaaaagtactcctacaacaaag |
19219092 |
T |
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| Q |
112 |
----------aatcatagagcaaattgtcaaactctagtcttgaaaacatggttggtctgcccctcctcttcctcctcattaaagtatatttaatatata |
201 |
Q |
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| T |
19219093 |
ttgtaatcaaaatcatagagcaaattgtcaaactcta-------aaacatggttggtctgcccctcctcttcctcctcattaaagtatatttaatatata |
19219185 |
T |
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| Q |
202 |
tacatcaaagtccatgatgccacattcacacattattaatccaactttgcatcacctcactttctgtgcctagatattgtttcctattataatcaaagat |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219186 |
tacatcaaagtccatgatgccacactcacacattattaatccaactttgcatcacctcactttctgtgcctagatattgtttcctattataatcaaagat |
19219285 |
T |
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| Q |
302 |
cagattcaataataatgacaaccttttccttcttcaaatcacttcttttctttcttctcac |
362 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219286 |
cagattcactaataatgacaaccttttccttcttcaaatcacttcttttctttcttctcac |
19219346 |
T |
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