View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2096_high_10 (Length: 269)
Name: NF2096_high_10
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 5983175 - 5983414
Alignment:
| Q |
13 |
aatatcggtccagatatgtattgtaatcggtaacactggcatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983175 |
aatatcggtggagatatgtattgtaatcggtaacactggtatgctgattgtttacatgatcattgttggtgagaccatattcttaattctagtgttttaa |
5983274 |
T |
|
| Q |
113 |
aattatatagatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5983275 |
aattatatagatgtaatccgatttggttttgtgtgattcagtttcgttttgttcgtatttgtaggcgatgtcatttcaggaacaacttcaagtggaattc |
5983374 |
T |
|
| Q |
213 |
accatcctggtatacttgaaggatggtttggtgtccattg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5983375 |
accatcctggtatacttgaaggatggtttggtgtccattg |
5983414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 252
Target Start/End: Original strand, 5961944 - 5962049
Alignment:
| Q |
146 |
tgattcagtttcgttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtg |
245 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||| ||| | ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5961944 |
tgattcagtttggttttgtttgtatt-gtaggtgatgtgatttctggaacgacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtg |
5962042 |
T |
|
| Q |
246 |
tccattg |
252 |
Q |
| |
|
||||||| |
|
|
| T |
5962043 |
tccattg |
5962049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 5967414 - 5967495
Alignment:
| Q |
171 |
ttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattg |
252 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
5967414 |
ttgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtccttgaaggatggtttggtgtccattg |
5967495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 5933379 - 5933472
Alignment:
| Q |
158 |
gttttgttcgtatttgtaggcgatatcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtgtccattg |
252 |
Q |
| |
|
|||||||||||||| ||||| ||| | |||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||| |
|
|
| T |
5933379 |
gttttgttcgtatt-gtaggtgatgtggtttctggaacaacttcaagtggaattcaccattctggtatcctcgaaggatggtttggagtccattg |
5933472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 5961794 - 5961842
Alignment:
| Q |
56 |
ctgattgtttacatgatcattgttggtgagaccatattcttaattctag |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
5961794 |
ctgattgtttacatgatcattattggtgagaccttattcttaagtctag |
5961842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 5967310 - 5967349
Alignment:
| Q |
65 |
tacatgatcattgttggtgagaccatattcttaattctag |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
5967310 |
tacatgatcattattggtgagaccatattcttaagtctag |
5967349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University