View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2096_high_11 (Length: 252)
Name: NF2096_high_11
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_high_11 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 14839971 - 14840212
Alignment:
| Q |
3 |
gggctagtttggttacatgtgttttagttcagattcaaaaattaggtacaacccattaatttgcatacatttaattttgagttgtattatgtagcattaa |
102 |
Q |
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| T |
14839971 |
gggctagtttggttacatgtgttttagttcagattcaaaaattaggtacaacccattaatttgcatacatttaattttgagttgtattatgtagcattaa |
14840070 |
T |
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| Q |
103 |
cacttgtgatcgaaagagtgtctggtgtctgacaccggcacaacactaacacaagtgattactttgaattatgccattgtctcaaaattttatccatgtc |
202 |
Q |
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| T |
14840071 |
cacttgtgatcgaaagagtgtctggtgtctgacaccggcacaacactaacacaagtgattactttgaattatgccattgtctcaaaattttatccatgtc |
14840170 |
T |
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| Q |
203 |
agtgtcagtgtaatgtccggtgcccatgtctttgtctgtgct |
244 |
Q |
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| T |
14840171 |
agtgtcagtgtcatgtccggtgcccatgtctttgtctgtgct |
14840212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 42192321 - 42192283
Alignment:
| Q |
157 |
gtgattactttgaattatgccattgtctcaaaattttat |
195 |
Q |
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| T |
42192321 |
gtgattacattgaattatgtcattgtctcaaaattttat |
42192283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 19369862 - 19369816
Alignment:
| Q |
157 |
gtgattactttgaattatgccattgtctcaaaattttatccatgtca |
203 |
Q |
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| T |
19369862 |
gtgattacattgaattatgtcattttctcaaaattttatccgtgtca |
19369816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0314 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 8993 - 8949
Alignment:
| Q |
157 |
gtgattactttgaattatgccattgtctcaaaattttatccatgt |
201 |
Q |
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| T |
8993 |
gtgattacgttgaattatgtcattttctcaaaattttatcgatgt |
8949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 5937435 - 5937475
Alignment:
| Q |
157 |
gtgattactttgaattatgccattgtctcaaaattttatcc |
197 |
Q |
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| T |
5937435 |
gtgattacattgaattatgtcattttctcaaaattttatcc |
5937475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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