View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2096_high_3 (Length: 417)
Name: NF2096_high_3
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 401
Target Start/End: Complemental strand, 34240234 - 34239836
Alignment:
| Q |
3 |
aggagaagcaaaggcaatggccatggcatcagtaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaaca |
102 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240234 |
aggaaaagctaaggcaatggccatggcatcagcaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaaca |
34240135 |
T |
|
| Q |
103 |
cttattagcctccttaaacacaacaagaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240134 |
cttattagcctccttaaacacaacaagaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaa |
34240035 |
T |
|
| Q |
203 |
ccagaagacgtaggttgagttgctcagcctcggcttcagcatcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34240034 |
ccagaagacgtaggttgagttgctcagcctcggcttcagcatcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactga |
34239935 |
T |
|
| Q |
303 |
aaaagatggtcaccgcatttctttcaatgatactttccaagaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34239934 |
aaaagatggtcaccgcatttctttcaatgatactttccaagaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattat |
34239836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University