View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2096_high_5 (Length: 340)
Name: NF2096_high_5
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_high_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 57 - 340
Target Start/End: Original strand, 43082904 - 43083187
Alignment:
| Q |
57 |
taggcaatttctacgaacatgcatgctaaagtagannnnnnnnnnnnggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
156 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082904 |
taggcaatttctacgaacatacatgctaaagtagattttttatttttggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
43083003 |
T |
|
| Q |
157 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083004 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
43083103 |
T |
|
| Q |
257 |
ccatgaaacataccaacattttgtactatgactatcgaagaagccacttgcgccttaatcaaaactacttcaccaaacacactc |
340 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083104 |
ccatgaaacataccaacagttcgtactatgactatccaagaagccacttgcgccttaatcaaaactacttcaccaaacacactc |
43083187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University