View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2096_high_6 (Length: 322)

Name: NF2096_high_6
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2096_high_6
NF2096_high_6
[»] chr2 (6 HSPs)
chr2 (1-81)||(11654503-11654583)
chr2 (1-81)||(11668268-11668348)
chr2 (239-305)||(11654264-11654330)
chr2 (239-305)||(11668029-11668095)
chr2 (160-194)||(11654384-11654418)
chr2 (160-194)||(11668149-11668183)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11654583 - 11654503
Alignment:
Q  1 gatgaagaagaagacgaattagatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 81  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11654583 gatgaagaggaagacgaattagatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11654503  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11668348 - 11668268
Alignment:
Q  1 gatgaagaagaagacgaattagatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 81  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11668348 gatgaagaggaagacgaattagatgaagaagatggagtagacgatgagggtggtgggtttttcggtgtagaagggctttta 11668268  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 11654330 - 11654264
Alignment:
Q  239 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11654330 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 11654264  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 11668095 - 11668029
Alignment:
Q  239 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11668095 gtgggttatggggagtagaaggggtagggtaatcatgtgaaggagtaggtgtagaaggggtaggata 11668029  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 11654418 - 11654384
Alignment:
Q  160 ttatgttggttatgtggtggagaagagctattagg 194  Q
    |||||||||||||||||||||||||||||||||||    
T  11654418 ttatgttggttatgtggtggagaagagctattagg 11654384  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 11668183 - 11668149
Alignment:
Q  160 ttatgttggttatgtggtggagaagagctattagg 194  Q
    |||||||||||||||||||||||||||||||||||    
T  11668183 ttatgttggttatgtggtggagaagagctattagg 11668149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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