View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2096_low_1 (Length: 555)

Name: NF2096_low_1
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2096_low_1
NF2096_low_1
[»] chr6 (27 HSPs)
chr6 (16-547)||(33303712-33304243)
chr6 (143-477)||(33387462-33387792)
chr6 (140-342)||(33644925-33645127)
chr6 (140-433)||(9166095-9166384)
chr6 (267-456)||(33261922-33262113)
chr6 (167-501)||(33409248-33409580)
chr6 (264-501)||(33398336-33398571)
chr6 (157-342)||(33285030-33285215)
chr6 (269-460)||(33358226-33358424)
chr6 (264-399)||(28870672-28870806)
chr6 (270-387)||(33407756-33407873)
chr6 (267-387)||(33396806-33396926)
chr6 (147-384)||(33271219-33271456)
chr6 (140-200)||(33358496-33358556)
chr6 (360-443)||(31563400-31563483)
chr6 (268-399)||(33281096-33281227)
chr6 (156-209)||(33057135-33057188)
chr6 (264-406)||(33056935-33057074)
chr6 (166-247)||(31563226-31563307)
chr6 (147-214)||(33398651-33398718)
chr6 (140-214)||(28870548-28870622)
chr6 (16-64)||(9166472-9166520)
chr6 (170-214)||(33262175-33262219)
chr6 (16-64)||(33262337-33262385)
chr6 (14-60)||(31563071-31563117)
chr6 (16-64)||(33285305-33285353)
chr6 (16-52)||(33387877-33387913)
[»] chr2 (3 HSPs)
chr2 (140-404)||(17441268-17441538)
chr2 (294-387)||(17446955-17447048)
chr2 (16-83)||(17441111-17441178)
[»] scaffold0428 (3 HSPs)
scaffold0428 (267-460)||(5691-5886)
scaffold0428 (268-399)||(13025-13156)
scaffold0428 (166-214)||(5945-5993)
[»] scaffold1408 (2 HSPs)
scaffold1408 (267-405)||(2-140)
scaffold1408 (166-214)||(199-247)
[»] chr4 (3 HSPs)
chr4 (314-400)||(31499608-31499694)
chr4 (16-64)||(31499304-31499352)
chr4 (264-329)||(31485290-31485355)


Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Complemental strand, 33304243 - 33303712
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattttccatggcacctgattgttggatgtttccatttgctcaagagtggaccgataagaaattgatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304243 caattatatcattggctttctatgttgtgcggtattttccatggcacctgattgttggatgtttccatttgctcaagagtggaccgataagaaattgatt 33304144  T
Q  116 aggatgagctgtaggagtgctaccgtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33304143 aggatgagctgtaggagtgctaccgtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctata 33304044  T
Q  216 gtgaatttgaaaaaatccattttaatatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33304043 gtgaatttgaaaaaatccattttaatatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggtgggtatgtaaagaagacctgca 33303944  T
Q  316 agaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaa 415  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33303943 agaattcaacttaacaatgatgaatcaagaaaatttcttggctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaa 33303844  T
Q  416 caagaatcattcatctcaagagtcataaacttcacagagaagaaacaacagatagatcacaagaaggtgatgaagagtctcaacctgcaaaatacaatct 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33303843 caagaatcattcatctcaagagtcataaacttcacagagaagaaacaacagatggatcacaagaaggtgatgaagagtctcaacctgcaaaatacaatct 33303744  T
Q  516 gcaatgaagagcattgacatgatgttcatctc 547  Q
    |||||||||||||||||||| |||||||||||    
T  33303743 gcaatgaagagcattgacattatgttcatctc 33303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 143 - 477
Target Start/End: Complemental strand, 33387792 - 33387462
Alignment:
Q  143 attctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaata 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    |||||||| ||| |||  |||| | |    
T  33387792 attctcaatggaggtcttgttacgaccaaatcaagtcacctatggataatctacttcccacgagagtcctcggatgaatttggaaatatctgttttgaca 33387693  T
Q  243 tttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatca 342  Q
    ||||| ||||  ||| |||  || |||||||||||||||||||||||||  ||||||||||| ||||||| ||||||||||||||| ||||||| |||||    
T  33387692 tttttaaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagaattcaacttaccaatgataaatca 33387593  T
Q  343 agaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcata 442  Q
     ||||||| ||| |||  |||||| |||| ||||||||||||||||| |||||||| | ||||      | |||||||||||||||| |||  |||||||    
T  33387592 cgaaaattccttggctccgaagtgtaagattttggcaattgaagatgggacacaactacaacc------acaacaagaatcattcatgtcacaagtcata 33387499  T
Q  443 a--acttcacagagaagaaacaacagatagatcacaa 477  Q
    |  | | ||| ||||||||||||||||| ||||||||    
T  33387498 actagtacaccgagaagaaacaacagatggatcacaa 33387462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 140 - 342
Target Start/End: Original strand, 33644925 - 33645127
Alignment:
Q  140 gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccatttta 239  Q
    ||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || |||| |||||     
T  33644925 gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatggataatctacttccctcgagattcctataatgaatttggaagaatctattttg 33645024  T
Q  240 atatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaa 339  Q
    | ||||||||| | |||| | |  || || ||||||||||||| ||||||||  ||||||||||| ||||||| ||| | ||||||||||||||||||||    
T  33645025 acatttttgagagggaaggtctgggtatgaaggtgaagagttgtgggtatcgttgggtatgtaaacaagacctacaatagttcaacttaacaatgatgaa 33645124  T
Q  340 tca 342  Q
    |||    
T  33645125 tca 33645127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 140 - 433
Target Start/End: Complemental strand, 9166384 - 9166095
Alignment:
Q  140 gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccatttta 239  Q
    |||||||| ||||||  ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||||||     
T  9166384 gtaattctgaatggatttcttgttttgaccaaatccagtcacctatggataatctacctcccccgagagtcctacgatgaatttggaaaaatccattttg 9166285  T
Q  240 atatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaa 339  Q
    | ||| ||  |||||||| |||   | || ||||||||| ||| || || ||  ||||||||||| ||||||| ||||| |||||||||||   ||||||    
T  9166284 acattattcggggtgaaggtttggatatgaaggtgaagacttgtggataccgttgggtatgtaaacaagacctacaagagttcaacttaac---gatgaa 9166188  T
Q  340 tcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctca 433  Q
    ||| ||||| |  || ||| ||| |||||||| |||||||||| | ||||||| ||| ||| |||| |||| |||||||||||||||| |||||    
T  9166187 tcacgaaaaatcattggctcggacgtgcaagactttggcaatttaggatgagagacagccacaacc-gaaccagaacaagaatcattcgtctca 9166095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 267 - 456
Target Start/End: Complemental strand, 33262113 - 33261922
Alignment:
Q  267 tggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtg 366  Q
    ||||||||||||||||||||||||   ||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| ||    
T  33262113 tggaggtgaagagttgcgggtatcattgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatg 33262014  T
Q  367 caagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaa 456  Q
     |||| |||||||||||||||||||||||||||| ||||  ||  ||||||||||||||||| ||||  ||||||||  |||||||||||||    
T  33262013 taagattttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaa 33261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 167 - 501
Target Start/End: Complemental strand, 33409580 - 33409248
Alignment:
Q  167 accaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtgaagattttagtt 266  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||  ||  | || ||   ||| |   ||   || | ||||||||| | |  |||    
T  33409580 accaaatcaagtcacctatggctagtctacttcccccgagagtcctatgatgtttatggaactctccgtgcgaaatgttatcagggtgaagttgtgggtt 33409481  T
Q  267 tggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtg 366  Q
    | |||||||| ||||||||||||||  ||||||||||| ||||||| ||| | |||||||| |||||||||||||| ||||||| ||| |||  ||||||    
T  33409480 ttgaggtgaaaagttgcgggtatcgttgggtatgtaaacaagacctacaaaagttcaacttcacaatgatgaatcatgaaaattccttggctcagaagtg 33409381  T
Q  367 caagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttc--acagagaagaaaca 462  Q
     |||| | ||||||||||||  |||||||||||| ||||      ||||||||||||||||||||||  ||||||||  |||||  | | ||||||||||    
T  33409380 taagattatggcaattgaaggcgagacacaaccacaacc------agaacaagaatcattcatctcacaagtcataactacttcgaagaaagaagaaaca 33409287  T
Q  463 acagatagatcacaagaaggtgatgaagagtctcaacct 501  Q
    |||||| |||||||||||||| | ||||||| |||||||    
T  33409286 acagatggatcacaagaaggtcaagaagagtttcaacct 33409248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 264 - 501
Target Start/End: Complemental strand, 33398571 - 33398336
Alignment:
Q  264 gtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaa 363  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||||||| | | | || ||||| |||||||||||||| ||||||| |||||||   ||    
T  33398571 gttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacgaaagttgaacttcacaatgatgaatcatgaaaattcctttgctcaaaa 33398472  T
Q  364 gtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacaga--gaagaa 459  Q
    ||| |||| | ||||||||||||  |||||||||||| ||||      ||||||||||||||||||||||  ||||||||  |||||  |||  ||||||    
T  33398471 gtgtaagattatggcaattgaaggcgagacacaaccacaacc------agaacaagaatcattcatctcacaagtcataactacttcgaagaaggaagaa 33398378  T
Q  460 acaacagatagatcacaagaaggtgatgaagagtctcaacct 501  Q
    ||||||||| |||||||||||||| | ||||||| |||||||    
T  33398377 acaacagatggatcacaagaaggtcacgaagagtttcaacct 33398336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 157 - 342
Target Start/End: Complemental strand, 33285215 - 33285030
Alignment:
Q  157 tcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatatttttgagggtgaa 256  Q
    |||| ||| ||||||||||||||| ||||||||||||||| || |  |||||||||||  | ||||||||||||||  || | | ||| ||| |||||||    
T  33285215 tcttattacgaccaaatcaagtcatctatggataatctacctctctagagagtcctatgataaatttgaaaaaatcagttgttacattgttgggggtgaa 33285116  T
Q  257 gattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatca 342  Q
    |||||  || |||||||||| ||||| || |||||  ||||||||||| ||||||| ||||| ||||| |||||||||||||||||    
T  33285115 gatttgggtatggaggtgaacagttgtggatatcgttgggtatgtaaacaagacctacaagagttcaatttaacaatgatgaatca 33285030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 269 - 460
Target Start/End: Complemental strand, 33358424 - 33358226
Alignment:
Q  269 gaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgca 368  Q
    |||||||||||||| | ||||||  |||| | |||| ||||||| ||||| |||||||| |||||||||||||| |||||| ||||  ||||||| ||||    
T  33358424 gaggtgaagagttgtgagtatcgttgggttt-taaacaagacctacaagagttcaacttcacaatgatgaatcacgaaaatctcttaactgggaaatgca 33358326  T
Q  369 agaatttggcaattgaagatgaga------cacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa 460  Q
    ||| |||||||||||||||| |||      | |||||  ||||| ||| ||||||||||||||||||||||  ||||||||  |||||||||||||||||    
T  33358325 agattttggcaattgaagattagacgcaaccgcaaccgcaaccgcaactagaacaagaatcattcatctcacaagtcataattacttcacagagaagaaa 33358226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 399
Target Start/End: Original strand, 28870672 - 28870806
Alignment:
Q  264 gtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaa 363  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||||||| ||||| |||||||||||||||||||| ||  |||||| ||| |||  |||    
T  28870672 gttttgaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaatgatgaa-cacaaaaattccttggctcagaa 28870770  T
Q  364 gtgcaagaatttggcaattgaagatgagacacaacc 399  Q
    || ||||| ||||| ||||||||||| |||||||||    
T  28870771 gttcaagattttggaaattgaagatgggacacaacc 28870806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 33407873 - 33407756
Alignment:
Q  270 aggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaa 369  Q
    |||||||||| ||||||||| |  ||||||||||| ||||||| ||| | ||||||||||||||||||||||| ||||||| ||| |||  |||||||||    
T  33407873 aggtgaagagctgcgggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcacgaaaattccttggctcagaagtgcaa 33407774  T
Q  370 gaatttggcaattgaaga 387  Q
    || ||||| |||||||||    
T  33407773 gattttggaaattgaaga 33407756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 267 - 387
Target Start/End: Complemental strand, 33396926 - 33396806
Alignment:
Q  267 tggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtg 366  Q
    ||||||||||||| ||| ||||| |  ||||||||||| ||||||| ||| | ||||||||||||||||||||||| ||||||| ||| | |  ||||||    
T  33396926 tggaggtgaagagctgcaggtatagttgggtatgtaaacaagacctacaaaagttcaacttaacaatgatgaatcatgaaaattccttggttcagaagtg 33396827  T
Q  367 caagaatttggcaattgaaga 387  Q
    ||||| ||||| |||||||||    
T  33396826 caagattttggaaattgaaga 33396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 147 - 384
Target Start/End: Complemental strand, 33271456 - 33271219
Alignment:
Q  147 tcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccatt-ttaatattt 245  Q
    |||| ||| ||||| ||| |||||||||||||||||||||||| |||| | |||| |||| |||||||  | |||||||||| |||  || |||  || |    
T  33271456 tcaaaggaagtcttattacgaccaaatcaagtcacctatggatgatcttcctccctcgagggtcctatgataaatttgaaaacatctgttgttacgatgt 33271357  T
Q  246 ttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaaga 345  Q
     |  ||||||||  ||  || |||||||||||||||||||||||||  || |||||||| ||||||| ||||| |||||  |||||||| ||||||| ||    
T  33271356 gtt-gggtgaaggcttgggtatggaggtgaagagttgcgggtatcgttggatatgtaaacaagacctacaagagttcaatataacaatgctgaatcacga 33271258  T
Q  346 aaatttctttgctgggaagtgcaagaatttggcaattga 384  Q
    ||||| ||| |||   || || |||| ||||||||||||    
T  33271257 aaattccttggctccaaaatgtaagattttggcaattga 33271219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 33358556 - 33358496
Alignment:
Q  140 gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcc 200  Q
    ||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||    
T  33358556 gtaattctcaatggaggtcttattacgcccaaatcaagtcacctgtggataatctacttcc 33358496  T

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Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 31563400 - 31563483
Alignment:
Q  360 ggaagtgcaagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa 443  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| | ||  ||||||| |||| |||||||||  ||||||||    
T  31563400 ggaagtgaaagaatttggcaattgaagatgagacacaaccacaactgcaagcagaacaataatctttcatctcataagtcataa 31563483  T

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Target: chr6; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 268 - 399
Target Start/End: Complemental strand, 33281227 - 33281096
Alignment:
Q  268 ggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgc 367  Q
    ||||||||||||||||| | ||||  |  |||||||| ||||||| ||||| ||||  |||||||| |||||||| |||  || ||| |||  |||||||    
T  33281227 ggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgc 33281128  T
Q  368 aagaatttggcaattgaagatgagacacaacc 399  Q
    |||| ||||| ||||||||||| |||||||||    
T  33281127 aagattttggaaattgaagatgggacacaacc 33281096  T

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Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 33057188 - 33057135
Alignment:
Q  156 gtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagt 209  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||    
T  33057188 gtcttgttacgaccaaatcaagtcacctatggattatctacttaccccgagagt 33057135  T

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Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 406
Target Start/End: Complemental strand, 33057074 - 33056935
Alignment:
Q  264 gtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaa 363  Q
    ||||||||||  |||||||||| |||||  ||||||||||| ||||  | ||||||||||| ||||   | ||||||||  |||||| |||  ||   ||    
T  33057074 gtttggaggtcgagagttgcggttatcgttgggtatgtaaacaagatatacaagaattcaatttaa---tcatgaatcacaaaaattccttaactccaaa 33056978  T
Q  364 gtgcaagaatttggcaattgaagatgagacacaaccagaaccg 406  Q
    |||||| | |||| |||||||||||||||||||||||||||||    
T  33056977 gtgcaaaattttgacaattgaagatgagacacaaccagaaccg 33056935  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 31563226 - 31563307
Alignment:
Q  166 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatccattttaatattttt 247  Q
    |||||||||||||||||||||||||||||||||||| |||| |||   |  |||||||  ||||||||||||| | ||||||    
T  31563226 gaccaaatcaagtcacctatggataatctacttccctcgagggtcacgtcatgaatttcgaaaaatccattttgacattttt 31563307  T

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Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 33398718 - 33398651
Alignment:
Q  147 tcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 214  Q
    ||||| ||| |||||||| |||| ||||||||||||||||||||  |||| |||||||||| ||||||    
T  33398718 tcaatagagatcttgttacgaccgaatcaagtcacctatggatagcctacatcccccgagattcctat 33398651  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 28870548 - 28870622
Alignment:
Q  140 gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 214  Q
    |||||| || || ||| |||| ||| |||||||||||||||||||||  || |||||||||||||||||| ||||    
T  28870548 gtaattatcgatagagatcttattacgaccaaatcaagtcacctatgactagtctacttcccccgagagtactat 28870622  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 9166520 - 9166472
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattttccatggcacct 64  Q
    |||| |||||||||||||| |||||||||| ||||| ||||||||||||    
T  9166520 caataatatcattggctttgtatgttgtgcagtattctccatggcacct 9166472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 33262219 - 33262175
Alignment:
Q  170 aaatcaagtcacctatggataatctacttcccccgagagtcctat 214  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||    
T  33262219 aaatcaagtcacctgtggctaatctacttaccccgagagtcctat 33262175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33262385 - 33262337
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattttccatggcacct 64  Q
    |||| ||||||||||||||||||||||||  |||||||||||| |||||    
T  33262385 caataatatcattggctttctatgttgtgttgtattttccatgacacct 33262337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 31563071 - 31563117
Alignment:
Q  14 atcaattatatcattggctttctatgttgtgcggtattttccatggc 60  Q
    |||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  31563071 atcaatgatatcattggctttgtatgttgtgcagtattttccgtggc 31563117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33285353 - 33285305
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattttccatggcacct 64  Q
    |||| |||||||||||||| |||||||||| || |||||| ||||||||    
T  33285353 caataatatcattggctttgtatgttgtgcagtgttttccgtggcacct 33285305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 33387913 - 33387877
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattt 52  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  33387913 caataatatcattggctttctatgttgtgcagtattt 33387877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 140 - 404
Target Start/End: Original strand, 17441268 - 17441538
Alignment:
Q  140 gtaattctcaatggaggtcttgttatga------ccaaatcaagtcacctatggataatctacttcccccgagagtcctatagtgaatttgaaaaaatcc 233  Q
    ||||||||||||||| ||||||||| ||      |||||||||||||| |||||||||||||||||| | | |||||||||  || ||||  | ||||||    
T  17441268 gtaattctcaatggaagtcttgttacgataacaaccaaatcaagtcacatatggataatctacttccactgtgagtcctatcatgcatttcgagaaatcc 17441367  T
Q  234 attttaatatttttgagggtgaagattttagtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaat 333  Q
     |||| | |||||||||||  ||| |||  || |||||||||||||||||||||||||  ||||||||||| ||||||| ||||| ||||||||||||||    
T  17441368 gttttgaaatttttgaggggcaagctttgggtatggaggtgaagagttgcgggtatcgttgggtatgtaaacaagacctacaagagttcaacttaacaat 17441467  T
Q  334 gatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaaccagaac 404  Q
    ||||||||| |||||   ||| |||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  17441468 gatgaatcacgaaaaaaccttggctcagaagtgcaagattttggcaattgaagatgagacacaaccagaac 17441538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 17446955 - 17447048
Alignment:
Q  294 gggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaaga 387  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| ||||| | ||||||| ||| |||  ||||||||||| ||| | |||||||||    
T  17446955 gggtatgtaaacaagacctacaagagttcaacttaacaatgttgaataacgaaaattccttggctcagaagtgcaagatttttgaaattgaaga 17447048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 17441111 - 17441178
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattttccatggcacctgattgttggatgtttccat 83  Q
    |||| |||||||||| ||| |||||||||| |||||||||||||||||| || || ||| ||||||||    
T  17441111 caataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccat 17441178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 267 - 460
Target Start/End: Complemental strand, 5886 - 5691
Alignment:
Q  267 tggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtg 366  Q
    |||| |||||| |||||||||||||  ||||||||||| || || | ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| ||    
T  5886 tggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatg 5787  T
Q  367 caagaatttggcaattgaagatgagacacaaccagaaccggaacaagaacaagaatcattcatctcaagagtcataa--acttcacagagaagaaa 460  Q
     |||| |||||||||||||||||||||||||||| ||||  ||  ||||||||||||||||| ||||  ||||||||  |||||||||||||||||    
T  5786 taagattttggcaattgaagatgagacacaaccacaaccacaatcagaacaagaatcattcacctcacaagtcataactacttcacagagaagaaa 5691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 268 - 399
Target Start/End: Original strand, 13025 - 13156
Alignment:
Q  268 ggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgc 367  Q
    ||||||||||||||||| | ||||  |  |||||||| ||||||| ||||| ||||  |||||||| |||||||| |||  || ||| |||  |||||||    
T  13025 ggaggtgaagagttgcgtgcatcgttgaatatgtaaacaagacctacaagagttcagtttaacaataatgaatcatgaagcttccttggctcagaagtgc 13124  T
Q  368 aagaatttggcaattgaagatgagacacaacc 399  Q
    |||| ||||| ||||||||||| |||||||||    
T  13125 aagattttggaaattgaagatgggacacaacc 13156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 5993 - 5945
Alignment:
Q  166 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 214  Q
    |||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  5993 gaccaaatcaagtcacctatggctagtctactttccccgagagtactat 5945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 405
Target Start/End: Complemental strand, 140 - 2
Alignment:
Q  267 tggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtg 366  Q
    |||| |||||| |||||||||||||  ||||||||||| || || | ||||| ||||||||||||||||||||||| ||||| | ||| |||  ||| ||    
T  140 tggatgtgaagtgttgcgggtatcgttgggtatgtaaacaaaacttacaagagttcaacttaacaatgatgaatcatgaaaaatccttggcttcgaaatg 41  T
Q  367 caagaatttggcaattgaagatgagacacaaccagaacc 405  Q
     |||| |||||||||||||||||||||||||||| ||||    
T  40 taagattttggcaattgaagatgagacacaaccacaacc 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 247 - 199
Alignment:
Q  166 gaccaaatcaagtcacctatggataatctacttcccccgagagtcctat 214  Q
    |||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  247 gaccaaatcaagtcacctatggctagtctactttccccgagagtactat 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 31499608 - 31499694
Alignment:
Q  314 caagaattcaacttaacaatgatgaatcaagaaaatttctttgctgggaagtgcaagaatttggcaattgaagatgagacacaacca 400  Q
    ||||| || ||||||||||||||||||||   ||||  ||| ||||| ||| |||||  ||||||||||||||||||| ||||||||    
T  31499608 caagagttgaacttaacaatgatgaatcacagaaataccttagctggaaagcgcaagtctttggcaattgaagatgaggcacaacca 31499694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 31499304 - 31499352
Alignment:
Q  16 caattatatcattggctttctatgttgtgcggtattttccatggcacct 64  Q
    |||| |||||||||||||| |||||||||| |||||||| |||||||||    
T  31499304 caataatatcattggctttgtatgttgtgcagtattttctatggcacct 31499352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 31485290 - 31485355
Alignment:
Q  264 gtttggaggtgaagagttgcgggtatcggcgggtatgtaaagaagacctgcaagaattcaacttaa 329  Q
    ||||||| ||||||||||||||||||||  |||||| |||  | || |||||||| ||||||||||    
T  31485290 gtttggaagtgaagagttgcgggtatcgttgggtatttaagcaggatctgcaagagttcaacttaa 31485355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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