View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2096_low_10 (Length: 304)
Name: NF2096_low_10
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 11298007 - 11298270
Alignment:
| Q |
19 |
aggttacacatgtgaagaacataaggttacacatgacatttgattataaagaaatattagtgatgaacaaaacaacacatatataaatggttaatatatc |
118 |
Q |
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| T |
11298007 |
aggttacacatgtgaagaacataaggttccacatgacatttgat-------aaatattagtgatgaagaaaacaacacatatataaatggttaatatatc |
11298099 |
T |
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| Q |
119 |
aaagatttagttaacactaatattattttt-ctaactcaggctacaacatcggatggcttcatcctcagcatccagagattgccggcagggcggtccgat |
217 |
Q |
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| T |
11298100 |
aaagatttagttaacactaatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccggcagggcggtccggt |
11298199 |
T |
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| Q |
218 |
gagaaagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgatac |
288 |
Q |
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| T |
11298200 |
gagaaagcaaacaagccacctgtgctaatacatcatggtctcttttctgtaagttttgttgatgctgatac |
11298270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 11292757 - 11292913
Alignment:
| Q |
123 |
atttagttaacactaatattattttt-ctaactcaggctacaacatcggatggcttcatcctcagcatccagagattgccggcagggcggtccgatgaga |
221 |
Q |
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| T |
11292757 |
atttagttaacaataatattatttttgctaactcaggctacaacatcggatggcttcatcctgagcatccagagattgccggcaggacagtccggtaaga |
11292856 |
T |
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| Q |
222 |
aagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgttg |
278 |
Q |
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| T |
11292857 |
aagcaaacaagccaccagtgctaatacatcatggtctcttttgtgtaagttttgttg |
11292913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 121 - 262
Target Start/End: Original strand, 30909831 - 30909973
Alignment:
| Q |
121 |
agatttagttaacactaatattattttt-ctaactcaggctacaacatcggatggcttcatcctcagcatccagagattgccggcagggcggtccgatga |
219 |
Q |
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| T |
30909831 |
agatttagttaacacgaatattatttttactgactcaggttacaacatcagatggcttcatcttgagtattcaaagattgccgacaaggcggtccggtga |
30909930 |
T |
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| Q |
220 |
gaaagcaaacaagccacctgtggtaatacatcatggtctcttt |
262 |
Q |
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| T |
30909931 |
gaaagcaaacaagccaacagtgttgatacaacatggtctcttt |
30909973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 30903939 - 30904034
Alignment:
| Q |
193 |
gagattgccggcagggcggtccgatgagaaagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgatac |
288 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| ||| ||||| |
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| T |
30903939 |
gagattgtcggcagggcggtccagcgagaaagcaaacaagccacccgtgctaatacaacatggtctcttttgtgtaagttttgttgttgcagatac |
30904034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 36706039 - 36705967
Alignment:
| Q |
204 |
cagggcggtccgatgagaaagcaaacaagccacctgtggtaatacatcatggtctcttttctgtaagttttgt |
276 |
Q |
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|||||||||||||| ||||||| |||||||||||||| |||| || ||||||||||||| |||||||||||| |
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| T |
36706039 |
cagggcggtccgataagaaagcggacaagccacctgtgttaatccaacatggtctcttttgtgtaagttttgt |
36705967 |
T |
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