View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2096_low_20 (Length: 244)

Name: NF2096_low_20
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2096_low_20
NF2096_low_20
[»] chr8 (1 HSPs)
chr8 (19-222)||(29270364-29270567)
[»] scaffold0349 (1 HSPs)
scaffold0349 (51-225)||(16680-16852)
[»] chr6 (25 HSPs)
chr6 (51-225)||(27715092-27715264)
chr6 (31-195)||(27682419-27682583)
chr6 (18-187)||(27703392-27703567)
chr6 (97-177)||(26852086-26852166)
chr6 (104-177)||(26626660-26626733)
chr6 (104-177)||(26650051-26650124)
chr6 (104-177)||(26732637-26732710)
chr6 (104-177)||(26756019-26756092)
chr6 (104-177)||(28782487-28782560)
chr6 (104-177)||(28789861-28789934)
chr6 (98-173)||(25486821-25486898)
chr6 (98-173)||(25548422-25548497)
chr6 (110-177)||(28795879-28795946)
chr6 (98-177)||(27078781-27078861)
chr6 (103-177)||(26953131-26953205)
chr6 (98-151)||(26146443-26146496)
chr6 (18-99)||(27078974-27079054)
chr6 (191-225)||(27695297-27695331)
chr6 (108-173)||(26638921-26638986)
chr6 (108-173)||(26744887-26744952)
chr6 (195-225)||(27682362-27682392)
chr6 (98-139)||(26059392-26059433)
chr6 (98-139)||(26079362-26079403)
chr6 (97-133)||(26962814-26962850)
chr6 (193-229)||(27607818-27607854)
[»] scaffold0419 (1 HSPs)
scaffold0419 (104-177)||(11005-11078)
[»] scaffold0277 (2 HSPs)
scaffold0277 (104-177)||(10265-10338)
scaffold0277 (104-177)||(1305-1378)
[»] chr4 (5 HSPs)
chr4 (104-173)||(18652126-18652195)
chr4 (104-173)||(18676184-18676253)
chr4 (104-173)||(18686224-18686293)
chr4 (104-173)||(18720714-18720783)
chr4 (104-173)||(18728150-18728219)
[»] chr1 (1 HSPs)
chr1 (104-177)||(26139534-26139607)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 29270364 - 29270567
Alignment:
Q  19 acctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaact 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270364 acctagactaaggtatgtaccccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaact 29270463  T
Q  119 cccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataattgagataaggatctgtgaataccacattct 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270464 cccacttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataattgagataaggatctgtgaataccacattct 29270563  T
Q  219 cctc 222  Q
    ||||    
T  29270564 cctc 29270567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 16852 - 16680
Alignment:
Q  51 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccatttccaccaatctttgcttttttagagg 150  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagagg 16753  T
Q  151 aggcacaaattgtgataatgaagtattattgctataattgagataaggatctgtgaataccacattctcctcctc 225  Q
    |||| |||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  16752 aggctcaaattgtgataatgaagtattattgc--taatttagataaggatctttgaataccacattctcctcctc 16680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 27715092 - 27715264
Alignment:
Q  51 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccatttccaccaatctttgcttttttagagg 150  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagagg 27715191  T
Q  151 aggcacaaattgtgataatgaagtattattgctataattgagataaggatctgtgaataccacattctcctcctc 225  Q
    |||| |||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  27715192 aggctcaaattgtgataatgaagtattattgc--taatttagataaggatctttgaataccacattctcctcctc 27715264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 31 - 195
Target Start/End: Complemental strand, 27682583 - 27682419
Alignment:
Q  31 gaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccatttccacc 130  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  27682583 gaatgtaccccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccacc 27682484  T
Q  131 aatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataattgagata 195  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||    
T  27682483 aatctttgcttttttagaggaggctcaaattgtgataatgaagtattattgctctgattgagata 27682419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 27703392 - 27703567
Alignment:
Q  18 cacctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcct------ctgtctc 111  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||      |||||||    
T  27703392 cacctagactaaggaatgtaccccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcctcctcttcctctgtctc 27703491  T
Q  112 tgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataa 187  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27703492 tgaaactcccatttccaccgatctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataa 27703567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 26852166 - 26852086
Alignment:
Q  97 atcctcctctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    |||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26852166 atcctcctctgtctctgaaactctaacttccatcaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 26852086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 26626733 - 26626660
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  26626733 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtatt 26626660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 26650124 - 26650051
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26650124 tctgtctttgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataataaagtatt 26650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 26732710 - 26732637
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||    
T  26732710 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtatt 26732637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 26756092 - 26756019
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26756092 tctgtctttgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataataaagtatt 26756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 28782560 - 28782487
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  28782560 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28782487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 28789934 - 28789861
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  28789934 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 25486898 - 25486821
Alignment:
Q  98 tcctcctctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcac--aaattgtgataatgaag 173  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  25486898 tcctcccctttctctgaaactcccacttccaccaatctttgcttttttagaggaggcacataaattgtgataatgaag 25486821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 25548497 - 25548422
Alignment:
Q  98 tcctcctctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  25548497 tcctcccctttctctgaaactcccacttccaccaatctttgctttttttgaggaggcataaattgtaataatgaag 25548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 28795946 - 28795879
Alignment:
Q  110 tctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  28795946 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 27078861 - 27078781
Alignment:
Q  98 tcctcctctgtctctgaaactcccatttccaccaatctttgc-ttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    |||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||  |||| |||||||| ||||||||    
T  27078861 tcctcctctgtctcggaaactcccacttccaccaatccttgctttttttagaggaggttcaaactgtgataacgaagtatt 27078781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 26953205 - 26953131
Alignment:
Q  103 ctctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    |||||||||||||||||||| ||| || ||||| |||||||| ||||||||| ||||||| |||||| |||||||    
T  26953205 ctctgtctctgaaactcccacttcaacaaatctatgctttttcagaggaggctcaaattgcgataataaagtatt 26953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 26146496 - 26146443
Alignment:
Q  98 tcctcctctgtctctgaaactcccatttccaccaatctttgcttttttagagga 151  Q
    |||||| || ||||||||||||||| |||||||||||||||||||||| |||||    
T  26146496 tcctcccctttctctgaaactcccacttccaccaatctttgctttttttgagga 26146443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 27079054 - 27078974
Alignment:
Q  18 cacctagactaaggaatgtaccacatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatc 99  Q
    ||||||||| |||||||||||| ||||||||||||| |||| ||||  |||| |||| ||||||||| ||||| ||||||||    
T  27079054 cacctagacaaaggaatgtaccccatgtctttctttcttccacttttatcaattccttttgttgcaacgaagc-ttgatatc 27078974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 27695297 - 27695331
Alignment:
Q  191 agataaggatctgtgaataccacattctcctcctc 225  Q
    |||||||||||||||||||||||||||||||||||    
T  27695297 agataaggatctgtgaataccacattctcctcctc 27695331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 26638986 - 26638921
Alignment:
Q  108 tctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||| ||||||||| | | ||||||||||||||||| | ||||| | ||||||||||||||||||    
T  26638986 tctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaag 26638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 26744952 - 26744887
Alignment:
Q  108 tctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||| ||||||||| | | ||||||||||||||||| | ||||| | ||||||||||||||||||    
T  26744952 tctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaag 26744887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 27682392 - 27682362
Alignment:
Q  195 aaggatctgtgaataccacattctcctcctc 225  Q
    |||||||||||||||||||||||||||||||    
T  27682392 aaggatctgtgaataccacattctcctcctc 27682362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 26059433 - 26059392
Alignment:
Q  98 tcctcctctgtctctgaaactcccatttccaccaatctttgc 139  Q
    |||||| || ||||||||||||||| ||||||||||||||||    
T  26059433 tcctcccctttctctgaaactcccacttccaccaatctttgc 26059392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 26079403 - 26079362
Alignment:
Q  98 tcctcctctgtctctgaaactcccatttccaccaatctttgc 139  Q
    |||||| || ||||||||||||||| ||||||||||||||||    
T  26079403 tcctcccctttctctgaaactcccacttccaccaatctttgc 26079362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 26962850 - 26962814
Alignment:
Q  97 atcctcctctgtctctgaaactcccatttccaccaat 133  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  26962850 atcctcctctgtttctgaaactcccaattccaccaat 26962814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 27607818 - 27607854
Alignment:
Q  193 ataaggatctgtgaataccacattctcctcctctgtg 229  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  27607818 ataaggatcagtgaataccacattcttctcctctgtg 27607854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 11078 - 11005
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  11078 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 11005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 10265 - 10338
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  10265 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 10338  T

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Target: scaffold0277; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 1305 - 1378
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    ||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  1305 tctgtgtctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtaataatgaagtatt 1378  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 18652126 - 18652195
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||||||||||||||||| |||||| ||||| |||||||| || | |||   |||||||||||||||||    
T  18652126 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaag 18652195  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 18676184 - 18676253
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||||||||||||||||| |||||| ||||| |||||||| || | |||   |||||||||||||||||    
T  18676184 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18676253  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 18686224 - 18686293
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||||||||||||||||| |||||| ||||| |||||||| || | |||   |||||||||||||||||    
T  18686224 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaag 18686293  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 18720714 - 18720783
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||||||||||||||||| |||||| ||||| |||||||| || | |||   |||||||||||||||||    
T  18720714 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18720783  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 18728150 - 18728219
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaag 173  Q
    ||||||||||||||||||| |||||| ||||| |||||||| || | |||   |||||||||||||||||    
T  18728150 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18728219  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 26139607 - 26139534
Alignment:
Q  104 tctgtctctgaaactcccatttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 177  Q
    |||||||||| || ||| |  ||||| ||||| | ||||||||| ||||| | |||||||||||||||||||||    
T  26139607 tctgtctctggaattcctacatccacaaatctatccttttttagtggagggagaaattgtgataatgaagtatt 26139534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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