View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2096_low_3 (Length: 471)
Name: NF2096_low_3
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 31251040 - 31251487
Alignment:
| Q |
17 |
gaaaaaagtggaagcaaaaacaatagaaaaatagtgacaacaaacaagcataatcaatacgtatcaattagtgtttatgcgtcagatgttttaagtttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31251040 |
gaaaaaagtggaagcaaaaacaatagaaaaatagtgacaacaaacaagcataatcaatacgtatcaattagtgtttatgcctcagatgttttaagtttga |
31251139 |
T |
|
| Q |
117 |
tctaacatcccaactttacaaaactaaaaatagctaaacaagttccagctaaaaaattagagaaatcgtttcataacaagagaaaggagtaagcgtgaca |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
31251140 |
tctaacatcccaaccttacaaaactaaaaatagctaaacaagttccagctaaaaacttagagaaatcgtttcataacaggacaaagaagtaagcgtgaca |
31251239 |
T |
|
| Q |
217 |
atatataaagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtatc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31251240 |
atatataaagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatctccattctctttggtatc |
31251339 |
T |
|
| Q |
317 |
acctttgcatgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31251340 |
acctttgcatgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaa |
31251439 |
T |
|
| Q |
417 |
atgctgcatttgatcacctcaatgttatggaaaaattaattccctatg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31251440 |
atgctgcatttgatcacctcaatgttatggaaaaattaattccctatg |
31251487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Complemental strand, 13004530 - 13004084
Alignment:
| Q |
17 |
gaaaaaagtggaagcaaaaacaatagaaaaatagtgacaacaaacaagcataatcaatacgtatcaattagtgtttatgcgtcagatgttttaagtttga |
116 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13004530 |
gaaaaaagtggatgcaaaaacaatagaaaaatagtgacaacaaacaagcataatcaatacgtatcaattagtgtttatgcgtcagatgttttaagtttga |
13004431 |
T |
|
| Q |
117 |
tctaacatcccaactttacaaaactaaaaatagctaaacaagttccagctaaaaaattagagaaatcgtttcataacaagagaaaggagtaagcgtgaca |
216 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
13004430 |
tctaacatcccaaccttaaaaaactaaaaatagctaaacaagttccagctaaaaacttagagaaatcgtttcataacaggacaaagaagtaagcgtgaca |
13004331 |
T |
|
| Q |
217 |
atatataaagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtatc |
316 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13004330 |
atatataaagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatctacattctctttggtatc |
13004231 |
T |
|
| Q |
317 |
acctttgcatgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13004230 |
acctttgcatgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccggaa |
13004131 |
T |
|
| Q |
417 |
atgctgcatttgatcacctcaatgttatggaaaaattaattccctat |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13004130 |
atgctgcatttgatcacctcaatgttatggaaaaattaattccctat |
13004084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 31095333 - 31094939
Alignment:
| Q |
17 |
gaaaaaagtggaagcaaaaacaatagaaa-aatagtgacaacaaacaagcataatcaatacgtatcaattagtgtttatgcgtcagatgttttaagtttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| || |||||||| ||| |||||||||| |
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| T |
31095333 |
gaaaaaagtggaagcaaaaacaatagaaagaatagtgacaacaaacaagcataatcaatacacattcattaatgattatgcgttggatattttaagttta |
31095234 |
T |
|
| Q |
116 |
atctaacatcccaactttacaaaactaaaaatagctaaacaagttccagctaaaaaattagagaaatcgtttcataacaagagaaaggagtaagcgtgac |
215 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31095233 |
-----------caactttacaaacataaaaatagctaaacaagttccagctaaaaaattagagaaatcgtttcataaca-------ggagtaagcgtgac |
31095152 |
T |
|
| Q |
216 |
aatatataaagattatcaatcttattttctagcaaacatcaatatcagttcttttctatctttcctttaacaccatgaagatcttcattctctttggtat |
315 |
Q |
| |
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|||||||||| ||||||||| ||||||||||| |||| ||||||| | |||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
31095151 |
aatatataaa--ttatcaatcacattttctagcatacatgaatatcattcctttgctatctttcttttaacaccatgaagattttcattctctttggtat |
31095054 |
T |
|
| Q |
316 |
cacctttgcatgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccgga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |
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|
| T |
31095053 |
cacctttgcatgtggcttttttggaaacttcatttcaaatgctaatcctctaccgtatgaagccatcttcaactttggtgactctataagtgataccgga |
31094954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 428
Target Start/End: Original strand, 16161882 - 16162184
Alignment:
| Q |
121 |
acatcccaactttacaaaactaaaaatagctaaacaagttccagctaaaaaattagagaaatcgtttcataacaagagaaaggagtaagcgtgacaatat |
220 |
Q |
| |
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|||||||| ||||||||| ||||||||| | || ||||||||||||| ||||||||||||||||| ||||| | ||||||||| || | ||| |
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| T |
16161882 |
acatcccatatttacaaaaataaaaatagttgaagaagttccagctaacaaattagagaaatcgttacataata-------ggagtaagcttggaagtat |
16161974 |
T |
|
| Q |
221 |
ataaagattatcaatcttattttctagcaaacatcaatatca------gttcttttctatctttcctttaacaccatgaagatcttcattctctttggta |
314 |
Q |
| |
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|||||||||| | || ||||| ||| |||||||||||||| ||||||| ||||| || ||| |||||||||||| |||||||||||| ||| |
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| T |
16161975 |
ataaagattacaattcgcattttatagaaaacatcaatatcaatatcagttctttgttatctatcatttc-caccatgaagattttcattctctttagta |
16162073 |
T |
|
| Q |
315 |
tcacctttgcatgtggcttttttggaaactttatttcaaatgctaatcctctaccgtatgaagccatattcaactttggcgactctacaagtgataccgg |
414 |
Q |
| |
|
| |||||||||||||| ||||| ||| || |||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||||| |
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|
| T |
16162074 |
ttacctttgcatgtggattttt---aaaaattgtttctaatgctaatcctctaccatatgaagccatctttaactttggtgactctacaagtgacaccgg |
16162170 |
T |
|
| Q |
415 |
aaatgctgcatttg |
428 |
Q |
| |
|
||| ||||| |||| |
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|
| T |
16162171 |
aaacgctgcttttg |
16162184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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