View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2096_low_5 (Length: 381)
Name: NF2096_low_5
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5932548 - 5932914
Alignment:
| Q |
1 |
aggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttcattttctg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5932548 |
aggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttcattttctg |
5932647 |
T |
|
| Q |
101 |
gagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcatggtgcctggtcttattactat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5932648 |
gagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggcttgcctgcttgtgtgaagaagttgggcatggtgcctggtcttattgctat |
5932747 |
T |
|
| Q |
201 |
agtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcc |
300 |
Q |
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| T |
5932748 |
agtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcc |
5932847 |
T |
|
| Q |
301 |
tttgggagatatggaaaagcacttttagagatatgtgttgttatcaataacgttggtgttcttattg |
367 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5932848 |
tttgggagatatggaaaagcagttttagagatatgtgttgttatcaataacgttggtgttcttattg |
5932914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5961434 - 5961800
Alignment:
| Q |
1 |
aggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttcattttctg |
100 |
Q |
| |
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|||||||| ||||||||||||||||| |||| ||||||||||||| || |||||||| ||| | ||||| |||||||| ||||||||||||||| ||| |
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| T |
5961434 |
aggaagaaaaaggaagttgttgatgaaaatgcacctttgttacctatgtgtcaagaaacagatgctgagtttcatgaattcaatggagcttcatttcctg |
5961533 |
T |
|
| Q |
101 |
gagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcatggtgcctggtcttattactat |
200 |
Q |
| |
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| |||||||||||||| || || |||||||| ||||||||||||||||| ||||| ||||| || || |||||||| ||||| ||||||||| || | || |
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| T |
5961534 |
gggctgttttcaatttgtccaccacagttattggtgctgggatcatgggcttgcccgcttgcgtcaaaaagttgggaatggtacctggtcttcttgccat |
5961633 |
T |
|
| Q |
201 |
agtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcc |
300 |
Q |
| |
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| ||||||||||||| |||||||||||| || |||| |||||| |||||||||| || ||||||||||||||||| ||||||||||||||||| ||| || |
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| T |
5961634 |
aatcctaacagcattattgacagagaaggcaattgagttcatgatcaggttttcgagagcagggaatctttcttcctatggaagtcttatgggagatacc |
5961733 |
T |
|
| Q |
301 |
tttgggagatatggaaaagcacttttagagatatgtgttgttatcaataacgttggtgttcttattg |
367 |
Q |
| |
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||||||| ||| ||||||||||| |||||||||||||| | |||| |||||||||| |||| |||| |
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|
| T |
5961734 |
tttgggaaatacggaaaagcactggtagagatatgtgttataatcactaacgttggtattctgattg |
5961800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 74 - 320
Target Start/End: Original strand, 5967017 - 5967263
Alignment:
| Q |
74 |
atgaatttaatggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagtt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||| |||||||| || ||||| |||||||| |||||||| ||||| |
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| T |
5967017 |
atgaatttaatggagcttcattttctggtgctgttttcaatttatcaaccacaattattggtgctggaattatgggattgcctgcatgtgtgaaaaagtt |
5967116 |
T |
|
| Q |
174 |
gggcatggtgcctggtcttattactatagtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttct |
273 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||| || ||||||||||||||| |||| ||||| |||||||||| ||||||||||| |||||| |
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| T |
5967117 |
agggatggtgcctggtcttattgtcatagtcctaacagctttattgacagagaagtcaattgatttcataatcaggttttctagggcagggaaactttct |
5967216 |
T |
|
| Q |
274 |
tcatatggaagtcttatgggggatgcctttgggagatatggaaaagc |
320 |
Q |
| |
|
|| ||||||| ||||||||| ||||||| ||||| ||| |||||||| |
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|
| T |
5967217 |
tcctatggaaatcttatgggagatgcctatgggaaatacggaaaagc |
5967263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5982858 - 5983175
Alignment:
| Q |
1 |
aggaagaacaaggaagttgttgatgagaatgtgcctttgttacctaagtctcaagaaagcgataccgagttacatgaatttaatggagcttcattttctg |
100 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||| ||||||||||||||| | ||||||| || || | |||||||||||| ||||||||||||| | |
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|
| T |
5982858 |
aggaagaagaaggaagtggttgatggaaatgtacctttgttacctaaggcacaagaaacaaatgttgattatcatgaatttaatagagcttcattttcag |
5982957 |
T |
|
| Q |
101 |
gagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgcttgtgtgaagaagttgggcatggtgcctggtcttattactat |
200 |
Q |
| |
|
|||||||||||||||| || || ||||| || ||||| || |||||||| |||||||||||||| | |||||||| ||||| ||||||||| || | || |
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|
| T |
5982958 |
gagctgttttcaatttgtcaaccacagtcattggtgccggaatcatgggcttgcctgcttgtgtcagaaagttggggatggtacctggtcttcttgccat |
5983057 |
T |
|
| Q |
201 |
agtcctaacagcatttttgacagagaagtcagttgaattcatgctcaggttttcaagggcagggaatctttcttcatatggaagtcttatgggggatgcc |
300 |
Q |
| |
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| |||| |||||||| | ||||| |||||| |||| || || | |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5983058 |
aatcctcacagcattactaacagaaaagtcaattgagtttgtgattaggttttcgagggcagggaatctttcttcctatggaagtcttatgggggatgcc |
5983157 |
T |
|
| Q |
301 |
tttgggagatatggaaaa |
318 |
Q |
| |
|
||||||| ||| |||||| |
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|
| T |
5983158 |
tttgggaaatacggaaaa |
5983175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 5630486 - 5630410
Alignment:
| Q |
82 |
aatggagcttcattttctggagctgttttcaatttatcgacaacagttatcggtgctgggatcatgggtttgcctgc |
158 |
Q |
| |
|
||||||||||||||||| || || |||||||| || |||| || |||| |||||||| ||||||| ||||||||| |
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|
| T |
5630486 |
aatggagcttcattttccggtgccgttttcaacttggcgactacgattattggtgctggaatcatggctttgcctgc |
5630410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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