View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2096_low_6 (Length: 361)
Name: NF2096_low_6
Description: NF2096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2096_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 14498028 - 14498157
Alignment:
| Q |
86 |
acatacctgaattgtcttaatagaaggtttattgatctgttgaagacgatatcttatgatgttcattctattcaactcatcctttggtttaaaagtgtta |
185 |
Q |
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| T |
14498028 |
acatacctgaattgtcttaatagaaggtttattgatctgttgaagacgatatcttatgatgttcattctattcaactcttcctttggtttaaaagtgtta |
14498127 |
T |
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| Q |
186 |
ttggcaacagggttgttatcaattgttgag |
215 |
Q |
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| T |
14498128 |
ttggcaacagggttgttatcaatttttgag |
14498157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 14498200 - 14498288
Alignment:
| Q |
258 |
tgtacaagattgtaaatgattggagaagtcaaacacaagctaaaatccatgtttaagaattttcctttctttgtttctattgaagaatc |
346 |
Q |
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| T |
14498200 |
tgtacaagattgtaaatgattggagaagtcaaacacaagctaaaatccatgtttaagaattttcctttctttgtttctattgaagaatc |
14498288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 29284869 - 29284818
Alignment:
| Q |
82 |
tttaacatacctgaattgtcttaatagaaggtttattgatctgttgaagacg |
133 |
Q |
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| T |
29284869 |
tttaacatacctgaattgtcttaatagctggtttgttgatctgttgaagacg |
29284818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 29244731 - 29244684
Alignment:
| Q |
82 |
tttaacatacctgaattgtcttaatagaaggtttattgatctgttgaa |
129 |
Q |
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| T |
29244731 |
tttaacatacctgaattgtcttaatagctggcttgttgatctgttgaa |
29244684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 29232746 - 29232701
Alignment:
| Q |
88 |
atacctgaattgtcttaatagaaggtttattgatctgttgaagacg |
133 |
Q |
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| T |
29232746 |
atacctgaattgtcttaataggaggcttgttaatctgttgaagacg |
29232701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 29356758 - 29356710
Alignment:
| Q |
85 |
aacatacctgaattgtcttaatagaaggtttattgatctgttgaagacg |
133 |
Q |
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| T |
29356758 |
aacatgcctgaattgtcttaacagcaggcttattgagctgttgaagacg |
29356710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 30910631 - 30910683
Alignment:
| Q |
82 |
tttaacatacctgaattgtcttaatagaaggtttattgatctgttgaagacga |
134 |
Q |
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| T |
30910631 |
tttaacatacttgaattgtcttaacagcaggcttgttgatctgttgaagacga |
30910683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 30920051 - 30920102
Alignment:
| Q |
83 |
ttaacatacctgaattgtcttaatagaaggtttattgatctgttgaagacga |
134 |
Q |
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| T |
30920051 |
ttaacatacttgaattgtcttaacagcaggcttattgatttgttgaagacga |
30920102 |
T |
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