View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_high_1 (Length: 746)
Name: NF20970_high_1
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 1e-95; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 466 - 731
Target Start/End: Complemental strand, 53431055 - 53430790
Alignment:
| Q |
466 |
tatctatcaactcataaattcctattttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacac |
565 |
Q |
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| T |
53431055 |
tatctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacac |
53430956 |
T |
|
| Q |
566 |
cttatgactatggagcaggggaaataacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgtta |
665 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||| || |||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53430955 |
cttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgtta |
53430856 |
T |
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| Q |
666 |
catgggatacaatacaaccacgatcaaggttatctcagaaaccgtccctgatagtttcagctgccc |
731 |
Q |
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||| ||||| || ||||| || || |||||||| ||| |||| |||||||||| ||||| |||||| |
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| T |
53430855 |
cataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaactgccc |
53430790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 491 - 731
Target Start/End: Complemental strand, 53423068 - 53422827
Alignment:
| Q |
491 |
tttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaat |
590 |
Q |
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|||||| |||||||||||||||| |||||||| |||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
| Q |
591 |
aacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaa-ccacgat |
689 |
Q |
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| T |
53422968 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaat |
53422869 |
T |
|
| Q |
690 |
caaggttatctcagaaaccgtccctgatagtttcagctgccc |
731 |
Q |
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| T |
53422868 |
taaggctatctcaaaaaccgtccctggtagtttcagttgccc |
53422827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 493 - 731
Target Start/End: Complemental strand, 26095415 - 26095177
Alignment:
| Q |
493 |
tttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataa |
592 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |||| |
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| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
|
| Q |
593 |
caccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaa |
692 |
Q |
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|| |||| ||| || ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| || |||||||| || || |
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| T |
26095315 |
caacaactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaa |
26095216 |
T |
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| Q |
693 |
ggttatctcagaaaccgtccctgatagtttcagctgccc |
731 |
Q |
| |
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|||||| ||| |||| |||||||||||||||| |||||| |
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| T |
26095215 |
ggttatttcaaaaactgtccctgatagtttcaactgccc |
26095177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 490 - 732
Target Start/End: Original strand, 48374785 - 48375027
Alignment:
| Q |
490 |
ttttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaa |
589 |
Q |
| |
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||||||| | |||||||||| ||| |||| ||| |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | |
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| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
590 |
taacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgat |
689 |
Q |
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||||| ||| ||||||||||||||||| || ||||||||||| |||| ||||||||||||||| | |||||||||||| |||||||| |||||||| || |
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| T |
48374885 |
taacaacaattgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactat |
48374984 |
T |
|
| Q |
690 |
caaggttatctcagaaaccgtccctgatagtttcagctgcccc |
732 |
Q |
| |
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|||||||| ||| |||| |||||||||| ||||| ||||||| |
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| T |
48374985 |
taaggttatttcaaaaactgtccctgatactttcaactgcccc |
48375027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 491 - 732
Target Start/End: Complemental strand, 53307870 - 53307629
Alignment:
| Q |
491 |
tttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaat |
590 |
Q |
| |
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||||| ||||||||||| ||||| |||||||| |||||| ||||||||| || | || ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
591 |
aacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatc |
690 |
Q |
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|||| |||| ||| |||||||||| ||||||||||||||||| |||| |||||||||| | |||| |||||||||||| |||| |||||||||||| | |
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| T |
53307770 |
aacaacaactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtg |
53307671 |
T |
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| Q |
691 |
aaggttatctcagaaaccgtccctgatagtttcagctgcccc |
732 |
Q |
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| T |
53307670 |
aagattatctctaaaaccgcccctgatagtttcaactgcccc |
53307629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 26095696 - 26095623
Alignment:
| Q |
20 |
ttgcaggcagcatcaaatctaggaacccaacttggagtgtctctgcaatcaaatcagccatcatgacctccggt |
93 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
26095696 |
ttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgacctccggt |
26095623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 48374581 - 48374647
Alignment:
| Q |
20 |
ttgcaggcagcatcaaatctaggaacccaacttggagtgtctctgcaatcaaatcagccatcatgac |
86 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |
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| T |
48374581 |
ttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgac |
48374647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 53423525 - 53423433
Alignment:
| Q |
20 |
ttgcaggcagcatcaaatctaggaacccaacttggagtgtctctgcaatcaaatcagccatcatgacctccggtttggcttttcatttttata |
112 |
Q |
| |
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||||||||||||| |||||||| ||||| |||||||||| ||||||||||| ||| |||||||||||||| || | | |||||||| |||||| |
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| T |
53423525 |
ttgcaggcagcattaaatctagaaaccctacttggagtgcctctgcaatcagatcggccatcatgacctctggatagacttttcatatttata |
53423433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 53431180 - 53431111
Alignment:
| Q |
20 |
ttgcaggcagcatcaaatctaggaacccaacttggagtgtctctgcaatcaaatcagccatcatgacctc |
89 |
Q |
| |
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||||||| |||||||||||||| ||||| |||||||||| ||| ||||| | |||||||||||||||||| |
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| T |
53431180 |
ttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgacctc |
53431111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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