View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20970_high_13 (Length: 239)

Name: NF20970_high_13
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20970_high_13
NF20970_high_13
[»] chr4 (3 HSPs)
chr4 (129-223)||(44983876-44983970)
chr4 (20-64)||(44983766-44983810)
chr4 (130-189)||(47528154-47528213)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 44983876 - 44983970
Alignment:
Q  129 taaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgcttatcgtaaaccggcttcctaatctcattatacttct 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44983876 taaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgcttatcgtaaaccggcttcctaatctcattatacttct 44983970  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 44983766 - 44983810
Alignment:
Q  20 aggatggctcaaaaactgcaaacaatgacaaagataaagcacaac 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44983766 aggatggctcaaaaactgcaaacaatgacaaagataaagcacaac 44983810  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 47528213 - 47528154
Alignment:
Q  130 aaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgctta 189  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||||| | |||||||    
T  47528213 aaaatactcacagcattcaaccagaagttaggaatagatttgatcatctcatcccgctta 47528154  T

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