View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20970_high_7 (Length: 344)
Name: NF20970_high_7
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 97 - 284
Target Start/End: Original strand, 1344322 - 1344509
Alignment:
| Q |
97 |
gattataattatgatgctaatgctatattgtgttgaacacggtgcatgatttcaaatattagaatcatgtaaatcttttagaaagttccacttctatgag |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
1344322 |
gattataattatcatgctaatgctatattgtgctgaacacggtgcatgatttcaaatattagaatgacgtaaatcttttagaaagttccacttctatgag |
1344421 |
T |
|
| Q |
197 |
tgcttgagctatctactcgatcgataatctcattttatgtcgatcactcgacaatatctgttttggtagagtaagcatttttaaattt |
284 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1344422 |
tgcttgagctatctacttaatcggtaatctcattttatgccgatcgctctacaatatctgttttggtagagtaagcatttttaaattt |
1344509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 148 - 284
Target Start/End: Complemental strand, 1355189 - 1355053
Alignment:
| Q |
148 |
tcaaatattagaatcatgtaaatcttttagaaagttccacttctatgagtgcttgagctatctactcgatcgataatctcattttatgtcgatcactcga |
247 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
1355189 |
tcaaatattaggatcatgtaaatcttttagaaagttccatttctatgagtgcttgagctatctactcaatcgataatctcgttttatgtcgatcacttca |
1355090 |
T |
|
| Q |
248 |
caatatctgttttggtagagtaagcatttttaaattt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355089 |
caatatctgttttggtagagtaagcatttttaaattt |
1355053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 1344596 - 1344545
Alignment:
| Q |
293 |
ttaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaa |
344 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
1344596 |
ttaacattgagaaaccaaatagtaacacactgacttcacaatcacaaggaaa |
1344545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 1354967 - 1355017
Alignment:
| Q |
294 |
taacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaa |
344 |
Q |
| |
|
||||||| |||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
1354967 |
taacattaagaaactaaatagtaacacattgacttcacaatcacaaggaaa |
1355017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 29051940 - 29052005
Alignment:
| Q |
279 |
aaatttgagaattattaacattgagaaaccgaaaagtaacacactgacttcacaatcacaaggaaa |
344 |
Q |
| |
|
||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
29051940 |
aaatttgagcatttctaacattgagaaaccaaatagtaacacactgacttcacaatcacaaagaaa |
29052005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 24618673 - 24618637
Alignment:
| Q |
278 |
taaatttgagaattattaacattgagaaaccgaaaag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618673 |
taaatttgagaattattaacattgagaaaccgaaaag |
24618637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University