View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_11 (Length: 344)
Name: NF20970_low_11
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_11 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 97 - 344
Target Start/End: Original strand, 1344322 - 1344569
Alignment:
| Q |
97 |
gattataattatgatgctaatgctatattgtgttgaacacggtgcatgatttcaaatattagaatcatgtaaatcttttagaaagttccacttctatgag |
196 |
Q |
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| T |
1344322 |
gattataattatcatgctaatgctatattgtgctgaacacggtgcatgatttcaaatattagaatgacgtaaatcttttagaaagttccacttctatgag |
1344421 |
T |
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| Q |
197 |
tgcttgagctatctactcgatcgataatctcattttatgtcgatcactcgacaatatctgttttggtagagtaagcatttttaaattttgaatagcttta |
296 |
Q |
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| T |
1344422 |
tgcttgagctatctacttaatcggtaatctcattttatgccgatcgctctacaatatctgttttggtagagtaagcatttttaaattttgaattgcttca |
1344521 |
T |
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| Q |
297 |
tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtg |
344 |
Q |
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| T |
1344522 |
tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtg |
1344569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 1355189 - 1354996
Alignment:
| Q |
148 |
tcaaatattagaatcatgtaaatcttttagaaagttccacttctatgagtgcttgagctatctactcgatcgataatctcattttatgtcgatcactcga |
247 |
Q |
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| T |
1355189 |
tcaaatattaggatcatgtaaatcttttagaaagttccatttctatgagtgcttgagctatctactcaatcgataatctcgttttatgtcgatcacttca |
1355090 |
T |
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| Q |
248 |
caatatctgttttggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacaatttccttgtgattgtgaagtca |
341 |
Q |
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| T |
1355089 |
caatatctgttttggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaagaatttccttgtgattgtgaagtca |
1354996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 29052064 - 29051981
Alignment:
| Q |
261 |
ggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtg |
344 |
Q |
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| T |
29052064 |
ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttgtgattgtgaagtcagtg |
29051981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 34265403 - 34265359
Alignment:
| Q |
272 |
catttttaaattttgaatagctttatcactatttcaactatgcaa |
316 |
Q |
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| T |
34265403 |
cattttaaaattttgaattgcttcatccctatttcaactatgcaa |
34265359 |
T |
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