View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_13 (Length: 282)
Name: NF20970_low_13
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 27559095 - 27559302
Alignment:
| Q |
35 |
cctaatgatgtcagtgactgtgcttggattctcatcgtggattagattcttctttccaactttgcaccaagcagctccttggcaattgaataccccaaca |
134 |
Q |
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| T |
27559095 |
cctaatgatgtcagtgactgtgcctggattctcgtcgtggataagattcttctttccaactttgcaccaaccagctccttggcaattgaataccccaaca |
27559194 |
T |
|
| Q |
135 |
actccagaatagtcattcatgttccatatctttaggagatagtagtgataaaatccatgagcaaagaacaatatgatatatcaatttgtcaggtaagtaa |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
27559195 |
actccagaatagtcattcatgttccatatctttaggagactgtagtaacaaaatccacgagcaaagaacaattcgatatatcaatttgtcaagtaagtaa |
27559294 |
T |
|
| Q |
235 |
agttaggt |
242 |
Q |
| |
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|||||||| |
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| T |
27559295 |
agttaggt |
27559302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 42351825 - 42351618
Alignment:
| Q |
35 |
cctaatgatgtcagtgactgtgcttggattctcatcgtggattagattcttctttccaactttgcaccaagcagctccttggcaattgaataccccaaca |
134 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42351825 |
cctaatgatgtcagtgactgtgcctggattctcgtcgtggataaggttcttctttccaactttgcaccaaccagctccttggcaattgaataccccaaca |
42351726 |
T |
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| Q |
135 |
actccagaatagtcattcatgttccatatctttaggagatagtagtgataaaatccatgagcaaagaacaatatgatatatcaatttgtcaggtaagtaa |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||| | | | | |||||||||||||||| |||||| |||||||||||||||||| |||| ||| |
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| T |
42351725 |
actccagaatagtcattcatgttccatatctttaggagactgaaataacaaaatccatgagcaaaaaacaatctgatatatcaatttgtcaagtaattaa |
42351626 |
T |
|
| Q |
235 |
agttaggt |
242 |
Q |
| |
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|||||||| |
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| T |
42351625 |
agttaggt |
42351618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 50917200 - 50917068
Alignment:
| Q |
36 |
ctaatgatgtcagtgactgtgcttggattctcatcgtggattagattcttctttccaactttgcaccaagcagctccttggcaattgaataccccaacaa |
135 |
Q |
| |
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||||||||| |||||| ||||| |||||||||||||||||| |||||||||||| |||||| |||||| | |||||||| |||||||||||| ||| || |
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| T |
50917200 |
ctaatgatgccagtgattgtgcctggattctcatcgtggataagattcttctttttaacttt-caccaaccggctccttgacaattgaatacctcaataa |
50917102 |
T |
|
| Q |
136 |
ctccagaatagtcattcatgttccatatctttag |
169 |
Q |
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||||||||| |||||||||||||| ||||||||| |
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| T |
50917101 |
ctccagaatggtcattcatgttccgtatctttag |
50917068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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