View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_14 (Length: 277)
Name: NF20970_low_14
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_14 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 52 - 277
Target Start/End: Original strand, 41497222 - 41497447
Alignment:
| Q |
52 |
aaagaaaaccaactaatataatctatgtaaccttttataatgtgaattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcata |
151 |
Q |
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| T |
41497222 |
aaagaaaaccaactaatataatctatgtaaccttttataatgtgaattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcata |
41497321 |
T |
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| Q |
152 |
cagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcat |
251 |
Q |
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| T |
41497322 |
cagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcat |
41497421 |
T |
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| Q |
252 |
atatatcatatcagatgagaaaggaa |
277 |
Q |
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| T |
41497422 |
atatatcatatcatatgagaaaggaa |
41497447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 41491033 - 41491149
Alignment:
| Q |
96 |
aattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttcca |
195 |
Q |
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| T |
41491033 |
aattacattaggtgaattgggacctaatgaagagatatgtggtgcctctgctcattcagattatggcatgatcactctcctattaaccaacggtgttcca |
41491132 |
T |
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| Q |
196 |
ggactgcaggttctcat |
212 |
Q |
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| T |
41491133 |
ggactgcaggttctcat |
41491149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 41483226 - 41483306
Alignment:
| Q |
135 |
tggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatctt |
215 |
Q |
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| T |
41483226 |
tggtgcctctgctcattcagattatggcatgatcactctcctaatcaccaatggtgttccaggactacaggttcacatctt |
41483306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41497168 - 41497198
Alignment:
| Q |
1 |
ttttctgccgtactttattagtagagtcaag |
31 |
Q |
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| T |
41497168 |
ttttctgccgtactttattagtagagtcaag |
41497198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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