View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_16 (Length: 265)
Name: NF20970_low_16
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1344358 - 1344238
Alignment:
| Q |
1 |
ttcaacacaatatagcattagcatgataattataacccgtaaaacgcaaaatttatttttcatatcagatttcttatcctgaacaagatttgctaatatt |
100 |
Q |
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|||| |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1344358 |
ttcagcacaatatagcattagcatgataattataatctgtaaaactcaaaatttatttttcatatcagatttctaatcctgaacaagatttgctaatatt |
1344259 |
T |
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| Q |
101 |
gagaagagttttgtccataag |
121 |
Q |
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| T |
1344258 |
aagaagagttttgtccataag |
1344238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 1344188 - 1344094
Alignment:
| Q |
167 |
tatgcaataatttccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgcatattattcgac |
261 |
Q |
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| T |
1344188 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgac |
1344094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 1355399 - 1355493
Alignment:
| Q |
167 |
tatgcaataatttccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgcatattattcgac |
261 |
Q |
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| T |
1355399 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgac |
1355493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 1355296 - 1355349
Alignment:
| Q |
68 |
gatttcttatcctgaacaagatttgctaatattgagaagagttttgtccataag |
121 |
Q |
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| T |
1355296 |
gatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag |
1355349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 1361329 - 1361280
Alignment:
| Q |
85 |
aagatttgctaata----ttgagaagagttttgtccataaggttactcat |
130 |
Q |
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| T |
1361329 |
aagatttgctaataattgttgagaagagttttatccataaggttactcat |
1361280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 24618577 - 24618493
Alignment:
| Q |
166 |
ctatgcaataatttccctgtgattgccagcatctctaagaatttcnnnnnnnctctcttcccaagaacaatttaatctgcgtgca |
250 |
Q |
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| T |
24618577 |
ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgca |
24618493 |
T |
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