View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20970_low_21 (Length: 217)
Name: NF20970_low_21
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 21371168 - 21371034
Alignment:
| Q |
16 |
gaatattgttgtgaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21371168 |
gaatattattgtgaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
21371069 |
T |
|
| Q |
116 |
aaagatttaaactaattaatcttgattaattaaca |
150 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21371068 |
aaagatttaaagtaattaatcttgattaattaaca |
21371034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 21386389 - 21386523
Alignment:
| Q |
16 |
gaatattgttgtgaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21386389 |
gaatattattgtgaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatag |
21386488 |
T |
|
| Q |
116 |
aaagatttaaactaattaatcttgattaattaaca |
150 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21386489 |
aaagatttaaagtaattaatcttgattaattaaca |
21386523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 21386555 - 21386611
Alignment:
| Q |
142 |
taattaacagggaaataactcatggtatatcccaaaggttcatatataggtgacatc |
198 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21386555 |
taataaacagtgaaagaactcatggtatatcccaaaggttcatatgtaggtgacatc |
21386611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 21371002 - 21370960
Alignment:
| Q |
142 |
taattaacagggaaataactcatggtatatcccaaaggttcat |
184 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
21371002 |
taatgaacagtgaaagaactcatggtatatcccaaaggttcat |
21370960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University