View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_3 (Length: 542)
Name: NF20970_low_3
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 63 - 524
Target Start/End: Complemental strand, 51762200 - 51761739
Alignment:
| Q |
63 |
cagttattggaattggagtgaggcttatgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaactt |
162 |
Q |
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| T |
51762200 |
cagttattggaattggagtgaggcttttgattcatgctttccccaagacgattgatcaagtagagagcgttacttataaacatagatgcatcggtaactt |
51762101 |
T |
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| Q |
163 |
ttcttttcacctccaacttcaccttcttttcagcatcacttctgttcaaaccgttaatacaagagttaccgttggtaaaagcagtgctggcccatgtttg |
262 |
Q |
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| T |
51762100 |
ttcttttcacctccaacttcaccttcttttcagcatcgcttctgttcaaaccgttaatacaagagttaccgttggtaaaagcagtgctggcccatgtttg |
51762001 |
T |
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| Q |
263 |
agcgttactcatttgccactcaaacgttcccatgcgaagatgttttaactcgttcaacgtttggtttaactgaagaaccgagtctgaaatttgagtaacg |
362 |
Q |
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| T |
51762000 |
agcgttactcatttgccactcaaacgttcccatgcgaagatgttttaactcgttcaacgtttggtttaactgaagaaccgagtctgaaatttgagtaacg |
51761901 |
T |
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| Q |
363 |
cagtccctcaaagcaactcgagttctagaagtggttgtggaccctgctaccatattggattttagggttttcttgaggtaaacggaaagggtgagagtgt |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761900 |
cagtccctcaaagcaactcgagttctagaagtggttgtggaccctgctaccatattggattttagggttttcttgaggtaaacggaaagggtgagagtgt |
51761801 |
T |
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| Q |
463 |
gagtgatactggctttgacggaggcttgagctaggtctaatggctttgttgtgagccctact |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51761800 |
gagtgatactggctttgacggaggcttgagctaggtctaatggctttgttgtgagacctact |
51761739 |
T |
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