View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_4 (Length: 500)
Name: NF20970_low_4
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 69 - 485
Target Start/End: Complemental strand, 5698363 - 5697945
Alignment:
| Q |
69 |
ttaaaaatcagactttttggtccttatagtatcacatttattggcattttaccccaacagtgatgattttatgtgttaattttgattttgaatagaaaac |
168 |
Q |
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| T |
5698363 |
ttaaaaatcagactttttggtccttatagtatcacatttattggcattttaccccagcagtgatgattttatgtgttaattttgattttgaataaaaaac |
5698264 |
T |
|
| Q |
169 |
ac--cacttttgaggtaaacaaaagtcatcacttttggataaaagtttatattcttgtttagaggtaagttttgatctttttcagtttatcgtgttggaa |
266 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698263 |
acgccacttttgaggtaaacaaaagtcatcacttttggataaaaatttatattcttgtttagaggtaagttttgatctttttcagtttatcgtgttggaa |
5698164 |
T |
|
| Q |
267 |
catttaattagaggtattgttttcgaaccagtgtcataagtcacctcctaacacttatgaatccaaattctgggatatattttggatgaagattttcata |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5698163 |
catttaattagaggtattgttttcgaaccagtgtcataagtcacctcctaacacttatgaatccaaattctgggatatattttggatgaagattttcata |
5698064 |
T |
|
| Q |
367 |
ccaaatatgcctaatctaatcaatatagcattgccgttactcctaagtgtagagtatcccctgtacggtggtgctaatgtaatgattgtgggaatgaaat |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5698063 |
ccaaatatgcctaatctaatcaatatagcattgccgttactcctaagtatagagtatcccctgtacggtggtgctagtgtaatgattgtgggaatgaaat |
5697964 |
T |
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| Q |
467 |
aaccaaacatgttaaaagt |
485 |
Q |
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| T |
5697963 |
aaccaaacatgttaaaagt |
5697945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 342 - 485
Target Start/End: Complemental strand, 5686324 - 5686183
Alignment:
| Q |
342 |
tatattttggatgaagattttcata-ccaaatatgcctaatctaatcaatatagcattgccgttactcctaagtgtagagtatcccctgtacggtggtgc |
440 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| | |
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| T |
5686324 |
tatattttggatggagattttcatatccaaatatgcctaatctaatcaatatagcattgccgttactcccaagtgtagagtggatcctgtac---ggtcc |
5686228 |
T |
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| Q |
441 |
taatgtaatgattgtgggaatgaaataaccaaacatgttaaaagt |
485 |
Q |
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|| || ||| ||||||||||||||| |||||||||||||||||| |
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| T |
5686227 |
tagtgcaataattgtgggaatgaaaggaccaaacatgttaaaagt |
5686183 |
T |
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