View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_5 (Length: 463)
Name: NF20970_low_5
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 294 - 436
Target Start/End: Original strand, 32868419 - 32868561
Alignment:
| Q |
294 |
ttgcttcgacatgaaatgtgtcaaggttcaatcacttccaaattaggcagacaataacaacaacattctgtatacaaactctaccaaaaatcaactttag |
393 |
Q |
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| T |
32868419 |
ttgcttcgacatgaaatgtgtcaatgttcaatcacttccaaattaggcagacaataacaacaacattctgtatacaaactctaccaaaaatcaactttag |
32868518 |
T |
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| Q |
394 |
tattagaataaaaattgaaaaataaatatatgtaaacaatggt |
436 |
Q |
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| T |
32868519 |
tattagaataaaaattgaaaaataaatatatgtaaacaatggt |
32868561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 35 - 232
Target Start/End: Original strand, 32868193 - 32868394
Alignment:
| Q |
35 |
cattcatgatattgtttactatactatcaagtacgacactttgtattttattcttctnnnnnnncaacatattagagagcaagaattacaattgagt--- |
131 |
Q |
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| T |
32868193 |
cattcatgatattgtttactatactatcaagtacgacactttgcattttattcttctaaaaaaacaacatat-agatagcaagaattacaattgagttta |
32868291 |
T |
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| Q |
132 |
--gccaatatattaatgggggcactaggtctagcccacgtattgatatgaatacatccgtccctggtgttagtgtttgaattttcatataaattttcatt |
229 |
Q |
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| T |
32868292 |
gtgccaatatattaatgggggcactaggtctagcccacgtattgatatgaatacatccgtccctggtgttagtgtttgaattttcatataaattctcttt |
32868391 |
T |
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| Q |
230 |
ttt |
232 |
Q |
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| T |
32868392 |
ttt |
32868394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 50821258 - 50821181
Alignment:
| Q |
204 |
tttgaattttcatataaattttcatttttctactcaatatcatgtacttttttgatagatctatgtcataaaaatcaaa |
282 |
Q |
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| T |
50821258 |
tttgaattttcatagaaattctcatttatctactaaatatcatgta-ttttttaatagatttgtttcataaaaatcaaa |
50821181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 50854603 - 50854680
Alignment:
| Q |
204 |
tttgaattttcatataaattttcatttttctactcaatatcatgtacttttttgatagatctatgtcataaaaatcaaa |
282 |
Q |
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| T |
50854603 |
tttgaattttcatagaaattctcatttatctactaaatatcatgta-ttttttaatagatttgtttcataaaaatcaaa |
50854680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 50821312 - 50821271
Alignment:
| Q |
195 |
gtgttagtgtttgaattttcatataaattttcatttttctac |
236 |
Q |
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| T |
50821312 |
gtgttagtgtttgaattttcatagaaattctcatttatctac |
50821271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 50854549 - 50854590
Alignment:
| Q |
195 |
gtgttagtgtttgaattttcatataaattttcatttttctac |
236 |
Q |
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| T |
50854549 |
gtgttagtgtttgaattttcatagaaattctcatttatctac |
50854590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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