View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_7 (Length: 411)
Name: NF20970_low_7
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 191 - 401
Target Start/End: Original strand, 43502663 - 43502874
Alignment:
| Q |
191 |
atggatacatatttttcattattcgaccttcaagtcaaagatctatccaaaagaa-aaagtttcttcaccattacctattttcctagatgatttttcagc |
289 |
Q |
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| T |
43502663 |
atggatacatatttttcattattcgaccttcaagccaaagatctatccaaaaaaataaagtttcttcaccattacctattttcctagatgatttttcagc |
43502762 |
T |
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| Q |
290 |
aaaccagcctaatttgaagccccacaccccttctcaatactttgtaaatctctccatcttgtcgagcaatgtctcccaaccttatttactttatttttga |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43502763 |
aaaccagcctaatttgaagccccacaccccttctcaatactttgtaaatctctccatcttgtcgagcaatgtctcccaaccttatttactttatttttga |
43502862 |
T |
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| Q |
390 |
gttcccagtatt |
401 |
Q |
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|||||||||||| |
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| T |
43502863 |
gttcccagtatt |
43502874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 43502527 - 43502665
Alignment:
| Q |
18 |
taaatcattccaaactgttgcaagatttgttgaatcttcaactattaattctcctacaatcaaagaataggcnnnnnnnnnnnaccgaataaccatttct |
117 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43502527 |
taaatcattccaaactgttgcaagatttcttcaatcttcaactattaattctcctacaatcaaagaataggc-ttttttttttaccgaataaccatttct |
43502625 |
T |
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| Q |
118 |
cgaccaatttcacctaacacatacatcaaacctttcaatg |
157 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
43502626 |
cgaccaattccacctaacacatacatcaaacctttcaatg |
43502665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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