View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20970_low_9 (Length: 344)
Name: NF20970_low_9
Description: NF20970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20970_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 39196364 - 39196048
Alignment:
| Q |
11 |
atcatcatcaaaactaaattccataacactctcccaattccattcatcatccaaatctaaacccatattcaaagaccattctccactttcaccgttattt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39196364 |
atcatcatcaaaactaaattccataacactctcccaattccatttatcatccaaatctaaacccatattcaaagaccattctccactttcaccgttgttt |
39196265 |
T |
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| Q |
111 |
gaggtttggttcacactactttcggggtcttcacatgaaaccaaattatatttaagacagtctccatcatcattggttgttctttcattttcttcacctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196264 |
gaggtttggttcacactactttcggggtcttcacatgaaaccaaattatatttaagacagtctccatcatcattggttgttctttcattttcttcacctc |
39196165 |
T |
|
| Q |
211 |
catcacccatcatttctctctcttgacttaaatttgaaatagacccacttgtttccagcaaacaattttccattgtcttgacatgagtacttatacacat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39196164 |
catcacccatcatttctctctcttgacttaaatttgaaacagacccacttgtttccagcaaacaattttccattgtcttgacatgagtacttatacacat |
39196065 |
T |
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| Q |
311 |
tgccccactgtcttcat |
327 |
Q |
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||||||||||||||||| |
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| T |
39196064 |
tgccccactgtcttcat |
39196048 |
T |
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