View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20971_high_2 (Length: 842)

Name: NF20971_high_2
Description: NF20971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20971_high_2
NF20971_high_2
[»] chr8 (2 HSPs)
chr8 (294-467)||(12933811-12933984)
chr8 (407-444)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (294-467)||(28608621-28608794)
chr4 (317-467)||(14177081-14177231)
chr4 (406-459)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (437-474)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (437-474)||(796698-796735)
chr6 (437-474)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (437-474)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 294 - 467
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  294 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 392  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  393 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 467  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  407 ggttgctccatataaatctcctcttccaaatctccatg 444  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 294 - 467
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  294 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 392  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  393 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 467  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 467
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  317 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 415  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  416 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 467  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 459
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  406 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 459  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  437 tctccatgaagaaatgcagttttcacatccaactgctc 474  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  437 tctccatgaagaaatgcagttttcacatccaactgctc 474  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  437 tctccatgaagaaatgcagttttcacatccaactgctc 474  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 474
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  437 tctccatgaagaaatgcagttttcacatccaactgctc 474  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University