View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20971_high_9 (Length: 335)
Name: NF20971_high_9
Description: NF20971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20971_high_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 32025150 - 32024822
Alignment:
| Q |
8 |
caccacagacatcttaattatattcatatggtatcatatacaatatccgacttttgtgtgtttaaatagcacacttttttgggtatcgtttatagataca |
107 |
Q |
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| T |
32025150 |
caccacacacatcttaattatattcatatggtatcatatacaatattcgacttttgtgtgtttaaatagcacacttttttgggtatcgtttatagataca |
32025051 |
T |
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| Q |
108 |
aagtccatactgttgtttaacgaagattaatcttcatcaaaaaattcgtagaatatagaagataagttccatttttcaacttaattttaactatagacaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
32025050 |
aagtccatactgttgtttaacgaagattaatcttcattaaaaaatttgtagaatatagaagataagttccatctttcaatttaattttcactatagacaa |
32024951 |
T |
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| Q |
208 |
aagtcagtgatcggatccacaccaacttatttaaggagtcaaactctcttaccgcttaaatcgtcggta-taaaacacctatttattaatagttaataaa |
306 |
Q |
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|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |
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| T |
32024950 |
aagtcaatgatcagatccacaacaacttatttaaggagtcaaactctcttaccgcttagatcatcggtacaaaaacacctatttattaatagttaataaa |
32024851 |
T |
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| Q |
307 |
actcatgtcaacttcaaaatatacttaac |
335 |
Q |
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||||| ||||||||||||||||||||||| |
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| T |
32024850 |
actcaagtcaacttcaaaatatacttaac |
32024822 |
T |
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