View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20971_low_1 (Length: 248)
Name: NF20971_low_1
Description: NF20971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20971_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 51111816 - 51111867
Alignment:
| Q |
175 |
ctgaattgagatttcttggaacgaattgatatgtataaggaaagagtaatat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51111816 |
ctgaattgagatttcttggaacgaattgatatgtcaaaggaaagagtaatat |
51111867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 51111634 - 51111663
Alignment:
| Q |
8 |
gggaaaatcttgggtgaagagtgagagaag |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
51111634 |
gggaaaatcttgggtgaagagtgagagaag |
51111663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University