View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20972_high_2 (Length: 405)
Name: NF20972_high_2
Description: NF20972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20972_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 44856364 - 44856137
Alignment:
| Q |
13 |
gaacacacaccttttaaaacgtggagaagtagaaaatctggagttcgaactccgatccctactc----tatctgtgatagttaccaactgagctgcgctt |
108 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||| |
|
|
| T |
44856364 |
gaacacgcaccttttaaaatgtggagaagtagaaaatctggagttcgaactccgatccctgcagataatatctgtgatagctaccaactgagctgcactt |
44856265 |
T |
|
| Q |
109 |
actgaacaatcaaatatcttccttaattagtgtgaaagtaggtaattttgcttatccttaagtctgaatgatgttttgttgagcaaatcgcaatgaagtt |
208 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
44856264 |
acggaacaatcaaatatcatccttaattagtgtgaaagtaggtaattttgcttatccttaagtatgaatgatgttttgttgagcaaatcgcaatgaaggt |
44856165 |
T |
|
| Q |
209 |
caaatgaattttattggtaaatgaaaaa |
236 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44856164 |
caaatgaattttattggtaaatgaaaaa |
44856137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 226 - 390
Target Start/End: Complemental strand, 44855954 - 44855790
Alignment:
| Q |
226 |
taaatgaaaaatttgcattctaaaattgtaagggtcgatcttttacccctcaaaatttgcaattgacaaaatgacattggtcttgaatgacgttggacac |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44855954 |
taaatgaaaaatttgcattctaaaattgtaagggtcgatcttttacccctcaaaatttgcaattgacaaaatgacattggtcttgaatgacgttggacac |
44855855 |
T |
|
| Q |
326 |
ctaggtccttatgttaacttgcaatgactagttttacggcaatttatgtaatttgggttaatttt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44855854 |
ctaggtccttatgttaacttgcaatgactagttttacggcaatttatgtaatttgggttaatttt |
44855790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University